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rdatatablespatialr-sf

Convert character vector of geometry into sfc_LINESTRING


I have a data table as follows, which I need to convert into an sf object:

library(data.table)
DT <- data.table(
    ID = c("A", "B", "C", "D", "E"),
    Value = 11:15
)

The geometry information for each ID is a character vector with differing number of coordinates making up the linestring. ID "B" has 4 coordinates; ID "C" has 5.

geo <- c("c(-112.116492521272, -112.116492811159, -112.116492812107, -112.116491781569, -112.116482854256, -112.116482819195, -112.116476331207, -112.116476325101, -112.11647589954, 33.3777109072744, 33.377733456163, 33.377733512504, 33.377817189599, 33.3785425053239, 33.3785454379367, 33.3790725760563, 33.3790731291841, 33.3791076444333)", 
         "c(-112.282916223332, -112.282955145531, -112.282977080374, -112.282986066594, 33.499285198973, 33.4994146786288, 33.4995335119373, 33.4998030580162)", 
         "c(-112.281058674957, -112.281058522318, -112.281057917087, -112.281057356648, -112.281055594103, -112.281047371356, -112.281048086137, -112.28104821173, 33.4937123457776, 33.4937301348982, 33.4938008007847, 33.4938659107566, 33.4940708243904, 33.4950232493953, 33.4951159682343, 33.4951322463168)", 
         "c(-112.282978024041, -112.282977000088, -112.282975472281, -112.282975387447, -112.282974470679, -112.282974464144, -112.282974284899, -112.28297410899, -112.282974107453, 33.5011764123633, 33.5013710145493, 33.5016617311961, 33.501678000948, 33.5018530730796, 33.5018546369058, 33.5018887965849, 33.5019223852857, 33.5019226044706)", 
         "c(-112.282986066594, -112.282985540911, -112.282984156895, -112.282983004093, -112.282982201845, 33.4998030580162, 33.4998965204233, 33.5001425170464, 33.5003478058912, 33.5004906801949)"
)

Adding the geometry information to DT:

DT$geometry <- geo

Now, I need to convert DT into an sf object with geometry specified as sfc_LINESTRING. I tried using st_cast to first convert the character-based geometry variable into linestring, but it yielded an error.

DT_sf <- st_cast(DT$geometry, "LINESTRING")
Error in UseMethod("st_cast") : 
  no applicable method for 'st_cast' applied to an object of class "character"

This conversion needs to be done for nearly 20,000 rows. So, I am looking for a computationally efficient way to achieve the required result.


Solution

  • You can use eval to "evaluate an expression given as a string"

    (This can be dangerious if your string isn't sanitised (think of SQL injection))

    So with your geo object you get

    lst <- lapply(geo, function(x) { eval(parse(text = x)) })
    
    str( lst )
    List of 5
    # $ : num [1:18] -112 -112 -112 -112 -112 ...
    # $ : num [1:8] -112.3 -112.3 -112.3 -112.3 33.5 ...
    # $ : num [1:16] -112 -112 -112 -112 -112 ...
    # $ : num [1:18] -112 -112 -112 -112 -112 ...
    # $ : num [1:10] -112 -112 -112 -112 -112 ...
    

    Since we're evaluating each vector in geo one at a time (inside the lapply), we can also make it an sfg object at the same time

    lst <- lapply(geo, function(x) {
      v <- eval(parse(text = x))
      m <- matrix(v, ncol = 2)
      sf::st_linestring(m)
    })
    

    Then all that's needed is to add the correct class attributes

    DT$geo <- lst
    
    DT$geo <- sf::st_as_sfc( DT$geo )
    DT <- sf::st_as_sf( DT )
    sf::st_crs( DT ) <- 4326
    
    DT
    # Simple feature collection with 5 features and 2 fields
    # Geometry type: LINESTRING
    # Dimension:     XY
    # Bounding box:  xmin: -112.283 ymin: 33.37771 xmax: -112.1165 ymax: 33.50192
    # Geodetic CRS:  WGS 84
    # ID Value                            geo
    # 1  A    11 LINESTRING (-112.1165 33.37...
    # 2  B    12 LINESTRING (-112.2829 33.49...
    # 3  C    13 LINESTRING (-112.2811 33.49...
    # 4  D    14 LINESTRING (-112.283 33.501...
    # 5  E    15 LINESTRING (-112.283 33.499...