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hpcfishpbsqsub

Why does this command for qsub to submit multiple pbs scripts work in the bash shell but not fish?

I have a bunch of .pbs files in one directory.

I can qsub the files no problem with this command in the bash shell but for the fish shell, I continuously hit enter and it just creates a new input line. Any ideas why it doesn't work in fish?

for file in *.pbs; do qsub $file; done

Solution

  • Fish's syntax for loops and other block constructs is different.

    In this case it's

    for file in *.pbs
    qsub $file
end

    or, on one line:

    for file in *.pbs; qsub $file; end

    Other looping constructs look similar - no introductory "do" and they end with "end".

    Other differences here: This behaves like bash with the nullglob option, so if no file matches the for-loop simply won't be executed, there's no need to guard for a literal *.pbs being passed.

    Also the $file doesn't need to be quoted because it's set as one element and so it will be passed as one element, no word splitting takes place.

    Fish uses a different script syntax from bash and other shells. To read up on it: Fish for bash users is the quick starting point, but the rest of the documentation is worth reading (in my, admittedly biased, opinion).