I need to graph a dose-response curve for some bad data. How can I fit a line to this for an LC50?
lc50<- data.table(Concentration = c(0,0.5,1.5,2.5), Mortality= c(0,0,100,100))
ggplot(lc50,aes(Concentration, Mortality)) +
stat_summary(fun.data=mean_cl_normal) +
scale_x_continuous(name="Concentration (mg/L)", limits=c(0, 2.5)) +
scale_y_continuous(name="% Mortality", limits=c(0, 100))+
theme(panel.grid.major = element_blank(), panel.grid.minor =
element_blank(),panel.background =
element_blank(), axis.line =
element_line(colour = "black"))
Output:
You can use this code:
lc50<- data.table(Concentration = c(0,0.5,1.5,2.5), Mortality= c(0,0,100,100))
ggplot(lc50,aes(Concentration, Mortality)) +
geom_line() +
geom_smooth(method = "auto") +
stat_summary(fun.data=mean_cl_normal) +
scale_x_continuous(name="Concentration (mg/L)", limits=c(0, 2.5)) +
scale_y_continuous(name="% Mortality", limits=c(0, 100))+
theme(panel.grid.major = element_blank(), panel.grid.minor =
element_blank(),panel.background =
element_blank(), axis.line =
element_line(colour = "black"))
Output: