I have an app running ok locally R 4.1.2, when I deploy on a server R 4.0.3 it fails on a very specific point rendering a datatable.
I have other datatables in the same app that work and render fine.
The error I get is very vage and already appears serveral times when building and installing the packages.
Vage error while building the docker container:
...
g++ -std=gnu++11 -shared -L/opt/ownr/R/lib/R/lib -L/usr/local/lib -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o slice.o summarise.o -L/opt/ownr/R/lib/R/lib -lR
installing to /opt/ownr/R/lib/R/library/00LOCK-dplyr/00new/dplyr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error : 'format_warning' is not an exported object from 'namespace:cli'
Warning: replacing previous import ‘ellipsis::check_dots_unnamed’ by ‘rlang::check_dots_unnamed’ when loading ‘pillar’
Warning: replacing previous import ‘ellipsis::check_dots_used’ by ‘rlang::check_dots_used’ when loading ‘pillar’
Warning: replacing previous import ‘ellipsis::check_dots_empty’ by ‘rlang::check_dots_empty’ when loading ‘pillar’
Warning: replacing previous import ‘ellipsis::check_dots_unnamed’ by ‘rlang::check_dots_unnamed’ when loading ‘tibble’
Warning: replacing previous import ‘ellipsis::check_dots_used’ by ‘rlang::check_dots_used’ when loading ‘tibble’
Warning: replacing previous import ‘ellipsis::check_dots_empty’ by ‘rlang::check_dots_empty’ when loading ‘tibble’
Then when I actually run the app the same error appears
Successfully fetched 6 tracks in 15.351 seconds
Warning: Error in : 'format_message' is not an exported object from 'namespace:cli'
121: %>%
120: <reactive:session$userData$tracks.per.ranger.per.month> [/opt/ownr/app/server.R#292]
104: session$userData$tracks.per.ranger.per.month
103: exprFunc [/opt/ownr/app/server.R#344]
102: widgetFunc
101: htmlwidgets::shinyRenderWidget
100: func
87: renderFunc
86: renderFunc
82: renderFunc
81: output$tableRanger
1: runApp
Code that generates the error:
# per ranger per month
session$userData$tracks.per.ranger.per.month <- reactive({
req(session$userData$tracksdata())
df.table <- session$userData$tracksdata()
df.table$month <- floor_date(as_date(df.table$startWhen), "month")
df.table$ranger <- as.factor(df.table$agentName)
df <- df.table %>% ### <<<<<<<<<<<<<<<<<<<<<<<<<-------------- line 292
dplyr::rename(duration=patrolDuration) %>%
dplyr::select('featureType','month','duration','ranger','length') %>%
dplyr::group_by(ranger,month) %>%
dplyr::summarize(patrols=n(),
duration = sum(duration),
length = sum(length))
# dplyr::mutate(
# avgLength = round(length/numberOfpatrols,0),
# avgSpeed = round(length/patrolDuration,0)
# )
df
})
I tried to downgrade dplyr and or plotly but no luck.
I am stuck , out of options...
Please advice !
============================= additional details =============================
Local sessionInfo()
─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.1.2 (2021-11-01)
os Ubuntu 18.04.6 LTS
system x86_64, linux-gnu
ui RStudio
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz Europe/Amsterdam
date 2022-02-18
─ Packages ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
package * version date lib source
assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.1.2)
bslib 0.2.5.1 2021-05-18 [1] CRAN (R 4.1.0)
cachem 1.0.5 2021-05-15 [1] CRAN (R 4.1.0)
Cairo 1.5-12.2 2020-07-07 [1] CRAN (R 4.1.2)
cli 3.1.0 2021-10-27 [1] CRAN (R 4.1.2)
colorRamps * 2.3 2012-10-29 [1] CRAN (R 4.1.1)
colorspace 2.0-1 2021-05-04 [1] CRAN (R 4.1.0)
crayon 1.4.1 2021-02-08 [1] CRAN (R 4.1.0)
crosstalk 1.1.1 2021-01-12 [1] CRAN (R 4.1.0)
curl 4.3.1 2021-04-30 [1] CRAN (R 4.1.0)
data.table 1.14.0 2021-02-21 [1] CRAN (R 4.1.0)
data.tree * 1.0.0 2020-08-03 [1] CRAN (R 4.1.0)
DBI 1.1.1 2021-01-15 [1] CRAN (R 4.1.1)
digest 0.6.27 2020-10-24 [1] CRAN (R 4.1.0)
dplyr * 1.0.8 2022-02-08 [1] CRAN (R 4.1.2)
DT * 0.18 2021-04-14 [1] CRAN (R 4.1.0)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.1.0)
fansi 0.5.0 2021-05-25 [1] CRAN (R 4.1.0)
farver 2.1.0 2021-02-28 [1] CRAN (R 4.1.0)
fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.1.0)
generics 0.1.2 2022-01-31 [1] CRAN (R 4.1.2)
geojsonR 1.1.0 2021-05-04 [1] CRAN (R 4.1.1)
ggplot2 * 3.3.5 2021-06-25 [1] CRAN (R 4.1.2)
glue 1.4.2 2020-08-27 [1] CRAN (R 4.1.0)
gtable 0.3.0 2019-03-25 [1] CRAN (R 4.1.0)
htmltools 0.5.1.1 2021-01-22 [1] CRAN (R 4.1.0)
htmlwidgets 1.5.3 2020-12-10 [1] CRAN (R 4.1.0)
httpuv 1.6.1 2021-05-07 [1] CRAN (R 4.1.0)
httr * 1.4.2 2020-07-20 [1] CRAN (R 4.1.0)
jquerylib 0.1.4 2021-04-26 [1] CRAN (R 4.1.0)
jsonlite * 1.7.2 2020-12-09 [1] CRAN (R 4.1.0)
labeling 0.4.2 2020-10-20 [1] CRAN (R 4.1.0)
later 1.2.0 2021-04-23 [1] CRAN (R 4.1.0)
lazyeval 0.2.2 2019-03-15 [1] CRAN (R 4.1.0)
lifecycle 1.0.1 2021-09-24 [1] CRAN (R 4.1.2)
loggit * 2.1.1 2021-02-28 [1] CRAN (R 4.1.0)
lubridate * 1.7.10 2021-02-26 [1] CRAN (R 4.1.0)
magrittr 2.0.1 2020-11-17 [1] CRAN (R 4.1.0)
mime 0.10 2021-02-13 [1] CRAN (R 4.1.0)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.1.0)
pillar 1.6.1 2021-05-16 [1] CRAN (R 4.1.0)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.1.0)
plotly * 4.9.3 2021-01-10 [1] CRAN (R 4.1.0)
promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.1.0)
purrr 0.3.4 2020-04-17 [1] CRAN (R 4.1.0)
R6 2.5.0 2020-10-28 [1] CRAN (R 4.1.0)
RColorBrewer * 1.1-2 2014-12-07 [1] CRAN (R 4.1.0)
Rcpp 1.0.7 2021-07-07 [1] CRAN (R 4.1.2)
rlang 1.0.1 2022-02-03 [1] CRAN (R 4.1.2)
rlist * 0.4.6.1 2016-04-04 [1] CRAN (R 4.1.0)
rsconnect 0.8.25 2021-11-19 [1] CRAN (R 4.1.2)
rstudioapi 0.13 2020-11-12 [1] CRAN (R 4.1.0)
sass 0.4.0 2021-05-12 [1] CRAN (R 4.1.0)
scales 1.1.1 2020-05-11 [1] CRAN (R 4.1.0)
sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 4.1.0)
shiny * 1.6.0 2021-01-25 [1] CRAN (R 4.1.0)
shinyjs * 2.1.0 2021-12-23 [1] CRAN (R 4.1.2)
stringi 1.6.2 2021-05-17 [1] CRAN (R 4.1.0)
tibble 3.1.2 2021-05-16 [1] CRAN (R 4.1.0)
tidyr 1.2.0 2022-02-01 [1] CRAN (R 4.1.2)
tidyselect 1.1.1 2021-04-30 [1] CRAN (R 4.1.0)
utf8 1.2.1 2021-03-12 [1] CRAN (R 4.1.0)
vctrs 0.3.8 2021-04-29 [1] CRAN (R 4.1.0)
viridisLite 0.4.0 2021-04-13 [1] CRAN (R 4.1.2)
withr 2.4.2 2021-04-18 [1] CRAN (R 4.1.0)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.1.0)
yaml 2.2.1 2020-02-01 [1] CRAN (R 4.1.0)
On the server I am stuck with R 4.0.3 sessionInfo()
─ Session info ───────────────────────────────────────────────────────────────
setting value
version R version 4.0.3 (2020-10-10)
os Ubuntu 20.04.1 LTS
system x86_64, linux-gnu
ui X11
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz Etc/UTC
date 2022-02-18 ─ Packages ───────────────────────────────────────────────────────────────────
package * version date lib source
bslib 0.2.4 2021-01-25 [1] CRAN (R 4.0.3)
cachem 1.0.4 2021-02-13 [1] CRAN (R 4.0.3)
cli 2.4.0 2021-04-05 [1] CRAN (R 4.0.3)
colorRamps * 2.3 2012-10-29 [1] CRAN (R 4.0.3)
colorspace 2.0-2 2021-06-24 [1] CRAN (R 4.0.3)
crayon 1.4.1 2021-02-08 [1] CRAN (R 4.0.3)
crosstalk 1.1.1 2021-01-12 [1] CRAN (R 4.0.3)
data.table 1.14.2 2021-09-27 [1] CRAN (R 4.0.3)
digest 0.6.27 2020-10-24 [1] CRAN (R 4.0.3)
dplyr * 1.0.8 2022-02-08 [1] CRAN (R 4.0.3)
DT * 0.17 2021-01-06 [1] CRAN (R 4.0.3)
ellipsis 0.3.1 2020-05-15 [1] CRAN (R 4.0.3)
fansi 0.4.2 2021-01-15 [1] CRAN (R 4.0.3)
fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.0.3)
generics 0.1.2 2022-01-31 [1] CRAN (R 4.0.3)
ggplot2 * 3.3.5 2021-06-25 [1] CRAN (R 4.0.3)
glue 1.4.2 2020-08-27 [1] CRAN (R 4.0.3)
gtable 0.3.0 2019-03-25 [1] CRAN (R 4.0.3)
htmltools 0.5.1.1 2021-01-22 [1] CRAN (R 4.0.3)
htmlwidgets 1.5.3 2020-12-10 [1] CRAN (R 4.0.3)
httpuv 1.5.5 2021-01-13 [1] CRAN (R 4.0.3)
httr * 1.4.2 2020-07-20 [1] CRAN (R 4.0.3)
jquerylib 0.1.3 2020-12-17 [1] CRAN (R 4.0.3)
jsonlite * 1.7.2 2020-12-09 [1] CRAN (R 4.0.3)
later 1.1.0.1 2020-06-05 [1] CRAN (R 4.0.3)
lazyeval 0.2.2 2019-03-15 [1] CRAN (R 4.0.3)
lifecycle 1.0.1 2021-09-24 [1] CRAN (R 4.0.3)
loggit * 2.1.1 2021-02-28 [1] CRAN (R 4.0.3)
lubridate * 1.8.0 2021-10-07 [1] CRAN (R 4.0.3)
magrittr 2.0.1 2020-11-17 [1] CRAN (R 4.0.3)
mime 0.10 2021-02-13 [1] CRAN (R 4.0.3)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.0.3)
pillar 1.5.1 2021-03-05 [1] CRAN (R 4.0.3)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.0.3)
plotly * 4.10.0 2021-10-09 [1] CRAN (R 4.0.3)
promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.0.3)
purrr 0.3.4 2020-04-17 [1] CRAN (R 4.0.3)
R6 2.5.0 2020-10-28 [1] CRAN (R 4.0.3)
RColorBrewer * 1.1-2 2014-12-07 [1] CRAN (R 4.0.3)
Rcpp 1.0.6 2021-01-15 [1] CRAN (R 4.0.3)
rlang 1.0.1 2022-02-03 [1] CRAN (R 4.0.3)
sass 0.3.1 2021-01-24 [1] CRAN (R 4.0.3)
scales 1.1.1 2020-05-11 [1] CRAN (R 4.0.3)
sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 4.0.3)
shiny * 1.6.0 2021-01-25 [1] CRAN (R 4.0.3)
shinyjs * 2.1.0 2021-12-23 [1] CRAN (R 4.0.3)
tibble 3.1.0 2021-02-25 [1] CRAN (R 4.0.3)
tidyr 1.2.0 2022-02-01 [1] CRAN (R 4.0.3)
tidyselect 1.1.1 2021-04-30 [1] CRAN (R 4.0.3)
utf8 1.2.1 2021-03-12 [1] CRAN (R 4.0.3)
vctrs 0.3.7 2021-03-29 [1] CRAN (R 4.0.3)
viridisLite 0.4.0 2021-04-13 [1] CRAN (R 4.0.3)
withr 2.4.1 2021-01-26 [1] CRAN (R 4.0.3)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.0.3)
yaml 2.2.1 2020-02-01 [1] CRAN (R 4.0.3)
It seems like a dependency version issue - the new dplyr (1.0.8) that you use uses a different cli version on 4.0 and on 4.1. The fault lies with dplyr that should not accept an older version of cli but that's outside your control.
What you could do is try to install an older version of dplyr, one that works with the cli package version 2.4.0. The easiest way to do that would be to install the older version of dplyr from github