Hi everyone based on the wage-dataset (wage being the dependent variable) and on the workflow created below, I would like to find out the following:
wage
of a person with age
equal to 30 for each piecewise model?pw6_wf_fit
model configuration and in particular the six breakpoints above: Exceeding which (approximate) value of age
correlates strongest with wage
?I tried to use versions of extract
but so far I don´t know how to apply it in R. Helpful for any comment
The code I use is the following:
if (!require("pacman")) install.packages("pacman")
# load (or install if pacman cannot find an existing installation) the relevant packages
pacman::p_load(
tidyverse, tidymodels, ISLR, patchwork,
rpart, rpart.plot, randomForest, gbm, kernlab, parsnip, skimr
)
data(Wage, package = "ISLR")
Wage %>%
tibble::as_tibble() %>%
skimr::skim()
lin_rec <- recipe(wage ~ age, data = Wage)
# Specify as linear regression
lm_spec <-
linear_reg() %>%
set_mode("regression") %>%
set_engine("lm")
plot_model <- function(wf_fit, data) {
predictions <-
tibble::tibble(age = seq(min(data$age), max(data$age))) %>%
dplyr::bind_cols(
predict(wf_fit, new_data = .),
predict(wf_fit, new_data = ., type = "conf_int")
)
p <- ggplot2::ggplot(aes(age, wage), data = data) +
geom_point(alpha = 0.05) +
geom_line(aes(y = .pred),
data = predictions, color = "darkgreen") +
geom_line(aes(y = .pred_lower),
data = predictions, linetype = "dashed", color = "blue") +
geom_line(aes(y = .pred_upper),
data = predictions, linetype = "dashed", color = "blue") +
scale_x_continuous(breaks = seq(20, 80, 5)) +
labs(title = substitute(wf_fit)) +
theme_classic()
return(p)
}
pw3_rec <- lin_rec %>% step_discretize(age, num_breaks = 3, min_unique = 5)
pw4_rec <- lin_rec %>% step_discretize(age, num_breaks = 4, min_unique = 5)
pw5_rec <- lin_rec %>% step_discretize(age, num_breaks = 5, min_unique = 5)
pw6_rec <- lin_rec %>% step_discretize(age, num_breaks = 6, min_unique = 5)
pw3_wf_fit <- workflow(pw3_rec, lm_spec) %>% fit(data = Wage)
pw4_wf_fit <- workflow(pw4_rec, lm_spec) %>% fit(data = Wage)
pw5_wf_fit <- workflow(pw5_rec, lm_spec) %>% fit(data = Wage)
pw6_wf_fit <- workflow(pw6_rec, lm_spec) %>% fit(data = Wage)
(plot_model(pw3_wf_fit, Wage) + plot_model(pw4_wf_fit, Wage)) /
(plot_model(pw5_wf_fit, Wage) + plot_model(pw6_wf_fit, Wage))
The answer to the first question is pretty straightforward:
map(list(pw3_wf_fit, pw4_wf_fit, pw5_wf_fit, pw6_wf_fit),
~predict(.x, new_data=tibble(age=30))) %>%
bind_rows()
# # A tibble: 4 × 1
# .pred
# <dbl>
# 1 99.3
# 2 94.2
# 3 92.3
# 4 89.5