Cytoscape - apps installed but not showing
I have successfully installed Cytoscape.
Version: 3.8.2
Java: 11.0.6 by AdoptOpenJDK
Java Home: /Applications/Cytoscape_v3.8.2/.install4j/jre.bundle/Contents/Home
OS: Mac OS X 10.15.6 - x86_64
I have successfully installed several apps.
However, only one of the apps JGF App shows in App drop down menu, none of the other apps seem present/active. For example, gexf-app should allow Cytoscape to import that format of file but neither 'File/Open' or 'File Import' recognize the file type.
Having read the docs, many file types are supported (seemingly) for import. However I have had no success in importing files which is arguably the most important to me at the moment.
How can I make the installed apps work or what may be preventing them from doing so?
Note: I this unanswered stackexchange question seems related.
My guess is that one of the apps you installed is crashing on startup and preventing the other apps from starting. I would start by disabling "JGF App" and "gexf-app" and see if the other apps all come up.
Looking at the list of apps, you won't see them in the apps menu, though -- look in the tools menu for "Merge" and "Analyze Network". Then, you can enable gexf-app and see if it starts up (if it doesn't, you should see an indicator in the lower left-hand corner of Cytoscape). If you click it, it will give you a little more information about what happened. If that starts up fine, you can try to enable "JGF App".
- How to manipulate edge curve style in cytoscape?
- How to write namespaced element attributes with LXML?
- How to prevent nodes overlapping in cytoscape?
- Legacy Cytoscape Attributes Format not importing
- Call an app in a loop with different parameters in Cytoscape
- using cytoscape on server
- Clustering Coefficient of 0.0 on Network Analyzer in Cytoscape
- Cytoscape 3.7.2 dosen't install on Mac OSx 10.15.3 even with JDK 8
- Destroying my view in cytoscape make me loose the style from my dot file
- Cell neighborhood analysis with relative distances in Cytoscape
- Select all nodes that are 1 or 3 nodes away from a gene of interest
- Importing data from postgres to cytoscape
- how can I create a key in cytoscape?
- Cytoscape don't load the node and edge attribute from my dot file
- How to create a "detail panel" in Cytoscape?
- Cytoscape - Set nodeCustomGraphicsSizeSync and nodeSizeLocked from CyREST
- What is the 'container' node create on merging multiple networks in Cytoscape?
- How to change node's color individually in Cytoscape?
- Invalid block type error in cytoscape
- Exporting a Neo4j database to CytoScape
- cytoscape doesn't display edge labels and attributes for GraphML file?
- Filter edges in Cytoscape Desktop
- How to get network into protein shape in cytoscape?
- Cytoskape xgmml edge.color and edge weight is not getting applied, how should I change this?
- Redundant edges removed, but no edge table column created
- How to delete the parent node without deleting the children nodes
- Cytoscape app 3.9.1 does not respect label text justification settings
- Cytoscape: Error 83, no JRE found Windows 10
- Cytoscape Automation - RequestException: Cannot find local or remote Cytoscape. Start Cytoscape and then proceed
- Cytoscape - apps installed but not showing