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pythonrmatlabreticulategekko

Error when trying to use Python Gekko in R via reticulate package


Python modules are accessible in R via reticulate package. Unfortunately, it is not working for GEKKO, the formulas are not being recognized as such.

I am receiving these kind of error messages when trying to pass equations like in m$Equation(x1 + x2 == 7): Error in x1 + x2 : non-numeric argument to binary operator.

library(reticulate)
gekko <- reticulate::import("gekko")
m <- gekko$GEKKO(remote=TRUE) 
x1 = m$Var(value=1, lb=1, ub=5)
x2 = m$Var(value=5, lb=1, ub=5)
x3 = m$Var(value=5, lb=1, ub=5)
x4 = m$Var(value=1, lb=1, ub=5)
m$Equation(x1 + x2 == 7)
m$Equation(x1 * x2 * x3 * x4 >= 25)
m$Obj(x1 * x4 * (x1 + x2 + x3) + x3)  
m$solve(disp=TRUE)  

I would really like to use GEKKO in R, is there some tweak we can do to make that possible?


Reposting the question from a GitHub issue in Gekko repository to see if additional help can be found here. A Python Gekko interface in MATLAB is also possible, if this helps.

% start Matlab from Anaconda prompt
close all; clear;
% Solve linear equations
% Initialize Model
m = py.gekko.GEKKO();
% Initialize Variables
x = m.Var();            % define new variable
y = m.Var();            % default=0
% Define Equations
m.Equation(3*x+2*y==1);
m.Equation(x+2*y==0);  
% Solve
m.solve();
% Extract values from Python lists using curly brackets
disp(['x: ' num2str(x.VALUE{1})]);
disp(['y: ' num2str(y.VALUE{1})]);

Solution

  • One way would be to run the Python code in R using the py_run_string() command. I have broken up the code using multiple strings to show the steps.

    Sys.setenv(RETICULATE_PYTHON = "set the path for python")
    
    library(reticulate)
    #Load the package 
    str1 = " 
    from gekko import GEKKO
    m = GEKKO()"
    
    py_run_string(str1)
    
    #Assign values with lower and upper bound along with equations
    str2 = "
    x1 = m.Var(value=1, lb=1, ub=5)
    x2 = m.Var(value=5, lb=1, ub=5)
    x3 = m.Var(value=5, lb=1, ub=5)
    x4 = m.Var(value=1, lb=1, ub=5)
    
    m.Equation(x1 + x2 == 7)
    m.Equation(x1 * x2 * x3 * x4 >= 25)
    m.Obj(x1 * x4 * (x1 + x2 + x3) + x3)
    m.solve(disp=True)"
    
    py_run_string(str2)
    
    #Print the results
    str3="
    print('')
    print('Results')
    print('x1: ' + str(x1.value))
    print('x2: ' + str(x2.value))
    print('x3: ' + str(x3.value))
    print('x4: ' + str(x4.value))
    "
    py_run_string(str3)
    
    #To access an object
    py$x1$VALUE