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rlubridate

Error while calculating age from dates with tidyverse: Error in FUN(X[[i]], ...) : subscript out of bounds


I am trying to calculate age from two date columns. First, I convert to NA any invalid date of births (dob). Next, I try to calculate age using lubridate (solution from: https://stackoverflow.com/a/41730322/8772229) but get an error message. Any advice on what is going wrong?

Data:

df <- data.frame(dob=as.Date(c("2020-09-26", "2017-12-01", NA)), today=as.Date(c("2020-09-25", "2020-09-25", "2020-09-25")))
df
         dob      today
1 2020-09-26 2020-09-25
2 2017-12-01 2020-09-25
3       <NA> 2020-09-25

Code:

library(lubridate)
df %>% 
  mutate(
    # convert non-plausible dates to NA
  dob= case_when((dob>today)~as.Date(NA_character_), TRUE~as.Date(dob)),
  # calculate age
  age=year(as.period(interval(start = dob, end = today))))

Message:

Error in FUN(X[[i]], ...) : subscript out of bounds

Solution

  • It gives me a different error because of trying to extract year value from a NA period. You can use time_length function from lubridate to get difference in years.

    library(dplyr)
    library(lubridate)
    
    df %>% 
      mutate(dob= replace(dob, dob > today, NA),
             age= time_length(today-dob, 'years'))
    
    #         dob      today      age
    #1       <NA> 2020-09-25       NA
    #2 2017-12-01 2020-09-25 2.817248
    #3       <NA> 2020-09-25       NA