I got the following list for my model:
List of 9
$ phi : num [1:5, 1:1500] 1.8e-04 1.8e-04 1.8e-04 1.8e-04 1.8e-04 ...
..- attr(*, "dimnames")=List of 2
.. ..$ : chr [1:5] "t_1" "t_2" "t_3" "t_4" ...
.. ..$ : chr [1:1500] "word1" "word2" "word3" "word4" ...
$ theta : num [1:500, 1:5] 0.1234 0.4567 0.01234 0.04567 0.02345 ...
..- attr(*, "dimnames")=List of 2
.. ..$ : chr [1:500] "1" "2" "3" "4" ...
.. ..$ : chr [1:5] "t_1" "t_2" "t_3" "t_4" ...
$ gamma : num [1:5, 1:1500] 0.20 0.70 0.10 0.1 0.11 ...
..- attr(*, "dimnames")=List of 2
.. ..$ : chr [1:5] "t_1" "t_2" "t_3" "t_4" ...
.. ..$ : chr [1:1500] "word1" "word2" "word3" "word4" ...
$ data :Formal class 'dgCMatrix' [package "Matrix"] with 6 slots
.. ..@ i : int [1:10000] 1234 6789 2233 1367 1123 1123 145 145 156 1325 ...
.. ..@ p : int [1:1500] 0 1 2 3 4 5 6 7 8 9 ...
.. ..@ Dim : int [1:2] 1234 1500
.. ..@ Dimnames:List of 2
.. .. ..$ : chr [1:500] "1" "2" "3" "4" ...
.. .. ..$ : chr [1:1500] "word1" "word2" "word3" "word4" ...
.. ..@ x : num [1:100000] 1 1 1 1 1 1 1 1 1 1 ...
.. ..@ factors : list()
$ alpha : Named num [1:5] 0.1 0.1 0.1 0.1 ...
..- attr(*, "names")= chr [1:5] "t_1" "t_2" "t_3" "t_4" ...
$ beta : Named num [1:1500] 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 ...
..- attr(*, "names")= chr [1:1500] "word1" "word2" "word3" "word4"
Is there a way of how to select $theta and all its attributes and save them as a data frame? In other words, I want to extract this part from the list:
$ theta : num [1:500, 1:5] 0.1234 0.4567 0.01234 0.04567 0.02345 ...
..- attr(*, "dimnames")=List of 2
.. ..$ : chr [1:500] "1" "2" "3" "4" ...
.. ..$ : chr [1:5] "t_1" "t_2" "t_3" "t_4" ...
and have a dataframe that looks like this (the column order does not matter):
Theta | var1 | var2 |
0.1234 | 1 | t_1 |
0.4567 | 2 | t_2 |
0.01234| 3 | t_3 |
I have tried lapply
and many other suggestions that I found in terms of list extraction but failed to extract the part shown above.
Thanks a lot!
As already metioned in comments, you can easily access $theta with list subsetting either model$theta
or model[['theta']]
.
$theta is a numeric matrix 500 x 5. To convert it into desirable format just melt it:
theta_matrix = model$theta
theta_df = reshape2::melt(theta_matrix, value.name = "Theta")