Hello I have a list of tuple such as :
indexes_to_delete=((6,9),(20,22),(2,4))
and a sequence that I can open using Biopython :
Sequence1 = "ABCDEFGHIJKLMNOPQRSTUVWXYZ"
and from indexes_to_delete
file I would like to remove the part from :
6 to 9
20 to 22
and
2 to 4
so if I follow these coordinate I should have a new_sequence
:
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26
so if I remove the coordinates I get :
A E J K L M N O P Q R S W X Y Z
1 5 10 11 12 13 14 15 16 17 18 19 23 24 25 26
indexes_to_delete=((6,9),(20,22),(2,4))
Sequence1 = "ABCDEFGHIJKLMNOPQRSTUVWXYZ"
s = ''.join(ch for i, ch in enumerate(Sequence1, 1) if not any(a <= i <= b for a, b in indexes_to_delete))
print(s)
Prints:
AEJKLMNOPQRSWXYZ