In the classification I use the variable x as the value and y as the labels. As here in the example for randomForest:
iris_train_values <- iris[,c(1:4)]
iris_train_labels <- iris[,5]
model_RF <- randomForest(x = iris_train_values, y = iris_train_labels, importance = TRUE,
replace = TRUE, mtry = 4, ntree = 500, na.action=na.omit,
do.trace = 100, type = "classification")
This solution works for many classifiers, however when I try to do it in nnet and get error:
model_nnet <- nnet(x = iris_train_values, y = iris_train_labels, size = 1, decay = 0.1)
Error in nnet.default(x = iris_train_values, y = iris_train_labels, size = 1, :
NA/NaN/Inf in foreign function call (arg 2)
In addition: Warning message:
In nnet.default(x = iris_train_values, y = iris_train_labels, size = 1, :
NAs introduced by coercion
Or on another data set gets an error:
Error in y - tmp : non-numeric argument to binary operator
How should I change the variables to classify?
The formula syntax works:
library(nnet)
model_nnet <- nnet(Species ~ ., data = iris, size = 1)
But the matrix syntax does not:
nnet::nnet(x = iris_train_values, y = as.matrix(iris_train_labels), size = 1)
I don't understand why this doesn't work, but at least there is a work around.
predict
works fine with the formula syntax:
?predict.nnet
predict(model_nnet,
iris[c(1,51,101), 1:4],
type = "class") # true classese are ['setosa', 'versicolor', 'virginica']