I would like to use both R and Python languages inside a Kaggle Kernel. Thus, when running
!pip install rpy2
inside a Kaggle Notebook I got the following error
Error: rpy2 in API mode cannot be built without R in the PATH or R_HOME defined. Correct this or force ABI mode-only by defining the environment variable RPY2_CFFI_MODE=ABI
I've found out a solution for users of Python within R, but a solution for calling R within Python in a Kaggle Kernel has not yet been provided.
One can notice that a Kaggle Kernel is using behind an anaconda environment. For example,
/opt/conda/bin/python3.7
Also, it is necessary to have R installed on this conda environment. Thus, we can use the subprocess
library to run the following script for installing R
import subprocess
subprocess.run('conda install -c conda-forge r-base', shell=True)
and the corresponding rpy2
package
!pip install rpy2
I have provided a notebook on Kaggle with a complete explanation. I'll appreciate your comments.