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pluginsjythonimagej

Using imageJ plugin from jython : how to call it in the script?

I want to use Jython to analyse images on ImageJ, but I don't know how to call existing plugins and run it from the script. Do you have an idea ? Thanks.

Solution

  • Use the syntax from packagename import namespace

    An example:

    from ij import IJ, ImagePlus
from ij.plugin.filter import RankFilters

imp = IJ.getImage()
ip = imp.getProcessor().convertToFloat()

radius = 2
RankFilters().rank(ip, radius, RankFilters.MEDIAN)

imp2 = ImagePlus(imp.title + " median filtered", ip)
imp2.show()

    You can find the name of specific plugins by searching the command finder.