I have used nltk for k mean clustering as I would like to change the distance metric. Does nltk k means have an inertia similar to that of sklearn? Can't seem to find in their documentation or online...
The code below is how people usually find inertia using sklearn k means.
inertia = []
for n_clusters in range(2, 26, 1):
clusterer = KMeans(n_clusters=n_clusters)
preds = clusterer.fit_predict(features)
centers = clusterer.cluster_centers_
inertia.append(clusterer.inertia_)
plt.plot([i for i in range(2,26,1)], inertia, 'bx-')
plt.xlabel('k')
plt.ylabel('Sum_of_squared_distances')
plt.title('Elbow Method For Optimal k')
plt.show()
you can write your own function to obtain the inertia for Kmeanscluster in nltk.
As per your question posted by you, How do I obtain individual centroids of K mean cluster using nltk (python) . Using the same dummy data, which look like this. after making 2 cluster..
Refereing to docs https://scikit-learn.org/stable/modules/generated/sklearn.cluster.KMeans.html, inertia is Sum of squared distances of samples to their closest cluster center.
feature_matrix = df[['feature1','feature2','feature3']].to_numpy()
centroid = df['centroid'].to_numpy()
def nltk_inertia(feature_matrix, centroid):
sum_ = []
for i in range(feature_matrix.shape[0]):
sum_.append(np.sum((feature_matrix[i] - centroid[i])**2)) #here implementing inertia as given in the docs of scikit i.e sum of squared distance..
return sum(sum_)
nltk_inertia(feature_matrix, centroid)
#op 27.495250000000002
#now using kmeans clustering for feature1, feature2, and feature 3 with same number of cluster 2
scikit_kmeans = KMeans(n_clusters= 2)
scikit_kmeans.fit(vectors) # vectors = [np.array(f) for f in df.values] which contain feature1, feature2, feature3
scikit_kmeans.inertia_
#op
27.495250000000006