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shellunixcluster-computinghpcsbatch

Run many sbatch .sh files on a computing cluster

I have many folders that contain .sh files(as shown below). I need to run each one of them on the cluster. I need help on how to put the following sbatch command into a loop.

cd file1
sbatch run_min.sh
sbatch run_eqbr.sh 
sbatch run_prod.sh
cd ..



 cd file2
    sbatch run_min.sh
    sbatch run_eqbr.sh 
    sbatch run_prod.sh

Folder structure

 folder1
     run_min.sh 
     run_eqbr.sh
     run_prod.sh

    folder2 
     run_min.sh
     run_eqbr.sh
     run_prod.sh

    folder3 
     run_min.sh
     run_eqbr.sh
     run_prod.sh

    folder4 
     run_min.sh
     run_eqbr.sh
     run_prod.sh
Solution

  • This worked.

    for dir in */; 
do sbatch run_min.sh;
sbatch run_eqbr.sh
sbatch run_prod.sh ; done