I am using ggcorrplot to build a correlation matrix, but the output reorders the columns in a way that I don't want. How do I reorder the columns?
For the purposes of this example, I'll be using the 'mtcars' dataset found in R. After the final output is produced, I need to reorder the columns, because it keeps reordering to a format that I don't want.
Note: Code is provided from the website as follows: http://www.sthda.com/english/wiki/ggplot2-quick-correlation-matrix-heatmap-r-software-and-data-visualization
library(ggcorrplot)
mydata <- mtcars
#correlation matrix
cormat <- round(cor(mydata),2)
library(reshape2)
melted_cormat <- melt(cormat)
head(melted_cormat)
library(ggplot2)
ggplot(data = melted_cormat, aes(x=Var1, y=Var2, fill=value)) +
geom_tile()
# Get upper triangle of the correlation matrix
get_upper_tri <- function(cormat){
cormat[lower.tri(cormat)]<- NA
return(cormat)
}
upper_tri <- get_upper_tri(cormat)
# Melt the correlation matrix
library(reshape2)
melted_cormat <- melt(upper_tri, na.rm = TRUE)
# Heatmap
library(ggplot2)
ggplot(data = melted_cormat, aes(Var2, Var1, fill = value))+
geom_tile(color = "white")+
scale_fill_gradient2(low = "blue", high = "red", mid = "white",
midpoint = 0, limit = c(-1,1), space = "Lab",
name="Pearson\nCorrelation") +
theme_minimal()+
theme(axis.text.x = element_text(angle = 45, vjust = 1,
size = 12, hjust = 1))+
coord_fixed()
This is the correlation matrix that I want, but I need to reorder the columns into an order different than the one shown.
Any help would be great. Thanks everyone!
Let's assume we want the x-axis
to be ordered based on its names (labels
) alphabetically and y-axis
the same but in reverse order. The following code works (rest of the code will be the same).
ggplot(data = melted_cormat, aes(reorder(Var2, -desc(as.character(Var2))),
reorder(Var1, desc(as.character(Var1))), fill = value))+
geom_tile(color = "white")+
scale_fill_gradient2(low = "blue", high = "red", mid = "white",
midpoint = 0, limit = c(-1,1), space = "Lab",
name="Pearson\nCorrelation") +
theme_minimal()+
theme(axis.text.x = element_text(angle = 45, vjust = 1,
size = 12, hjust = 1))+
coord_fixed()