I need to filter documents in an Elasticsearch
index and then aggregate them by field. Here is the code of what I am trying to do:
import elasticsearch
from elasticsearch_dsl import Search, Q, Index, MultiSearch
es_client = elasticsearch.Elasticsearch([url],
timeout=30, retry_on_timeout=True)
project_ids=['CSI']
family_ids=['SF6140691_WES_CIDR']
sample_ids=['S1379354_CIDR']
gene_symbols=['GLTPD1', 'CCNL2', 'MRPL20']
genes_filter = Q('bool', must=[Q('terms', project_id=project_ids),
Q('terms', family_id=family_ids),
Q('terms', sample_id=sample_ids),
Q('terms', gene_symbol=gene_symbols)])
search = Search(using=es_client, index="GENES_DATA")
search = search.filter(genes_filter).execute()
results = search.aggs.bucket('by_family', 'terms', field='family_id', size=0)
Currently I am getting the following error:
'{!r} object has no attribute {!r}'.format(self.class.name, name)) AttributeError: 'Terms' object has no attribute 'execute'
I tried to switch filtering and aggregation, tried doing execute()
at the very end, but it does not help. How could this simple transformation be achieved - filtering + aggregation
? I found examples of doing aggregations separately or filtering separately but have trouble finding both in one query.
instead of
search = search.filter(genes_filter)
results = search.aggs.bucket('by_family', 'terms', field='family_id', size=0)
you should have:
search = search.filter(genes_filter)
search.aggs.bucket('by_family', 'terms', field='family_id', size=0)
results = search.execute()
First you add a filter, then you define the aggregations and finally you execute your search.