I'm on Centos and I'm trying to install pandas but I get the following error:
sudo pip3 install pandas ~
Collecting pandas
Requirement already satisfied (use --upgrade to upgrade): python-dateutil>=2.5.0 in /usr/local/lib/python3.5/site-packages (from pandas)
Collecting numpy>=1.9.0 (from pandas)
Using cached https://files.pythonhosted.org/packages/2d/80/1809de155bad674b494248bcfca0e49eb4c5d8bee58f26fe7a0dd45029e2/numpy-1.15.4.zip
Requirement already satisfied (use --upgrade to upgrade): pytz>=2011k in /usr/local/lib/python3.5/site-packages (from pandas)
Requirement already satisfied (use --upgrade to upgrade): six>=1.5 in /usr/local/lib/python3.5/site-packages (from python-dateutil>=2.5.0->pandas)
Building wheels for collected packages: numpy
Running setup.py bdist_wheel for numpy
Complete output from command /usr/local/bin/python3.5 -c "import setuptools;__file__='/tmp/pip-build-iu_r4bvr/numpy/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmp6jr137vfpip-wheel-:
blas_opt_info:
blas_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
NOT AVAILABLE
blis_info:
customize UnixCCompiler
libraries blis not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
NOT AVAILABLE
openblas_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
NOT AVAILABLE
atlas_3_10_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries tatlas not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64/atlas', '/usr/lib64/sse2', '/usr/lib64', '/usr/lib/sse2', '/usr/lib']
NOT AVAILABLE
atlas_3_10_blas_info:
customize UnixCCompiler
libraries satlas not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64/atlas', '/usr/lib64/sse2', '/usr/lib64', '/usr/lib/sse2', '/usr/lib']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64/atlas', '/usr/lib64/sse2', '/usr/lib64', '/usr/lib/sse2', '/usr/lib']
NOT AVAILABLE
atlas_blas_info:
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64/atlas', '/usr/lib64/sse2', '/usr/lib64', '/usr/lib/sse2', '/usr/lib']
NOT AVAILABLE
accelerate_info:
NOT AVAILABLE
blas_info:
customize UnixCCompiler
customize UnixCCompiler
C compiler: gcc -pthread -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating /tmp/tmpt7qb9hvv/tmp
creating /tmp/tmpt7qb9hvv/tmp/tmpt7qb9hvv
compile options: '-I/usr/local/include -I/usr/include -c'
gcc: /tmp/tmpt7qb9hvv/source.c
/tmp/tmpt7qb9hvv/source.c:1:19: warning: cblas.h: No such file or directory
/tmp/tmpt7qb9hvv/source.c: In function ‘main’:
/tmp/tmpt7qb9hvv/source.c:6: warning: implicit declaration of function ‘cblas_ddot’
gcc -pthread /tmp/tmpt7qb9hvv/tmp/tmpt7qb9hvv/source.o -L/usr/lib64 -lcblas -o /tmp/tmpt7qb9hvv/a.out
/usr/bin/ld: cannot find -lcblas
collect2: ld returned 1 exit status
/usr/bin/ld: cannot find -lcblas
collect2: ld returned 1 exit status
gcc -pthread /tmp/tmpt7qb9hvv/tmp/tmpt7qb9hvv/source.o -L/usr/lib64 -lblas -o /tmp/tmpt7qb9hvv/a.out
/tmp/tmpt7qb9hvv/tmp/tmpt7qb9hvv/source.o: In function `main':
/tmp/tmpt7qb9hvv/source.c:6: undefined reference to `cblas_ddot'
collect2: ld returned 1 exit status
/tmp/tmpt7qb9hvv/tmp/tmpt7qb9hvv/source.o: In function `main':
/tmp/tmpt7qb9hvv/source.c:6: undefined reference to `cblas_ddot'
collect2: ld returned 1 exit status
Running from numpy source directory.
/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py:625: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
Traceback (most recent call last):
File "/usr/local/lib/python3.5/distutils/unixccompiler.py", line 194, in link
self.spawn(linker + ld_args)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/ccompiler.py", line 89, in <lambda>
m = lambda self, *args, **kw: func(self, *args, **kw)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/ccompiler.py", line 152, in CCompiler_spawn
raise DistutilsExecError('Command "%s" failed with exit status %d%s' % (cmd, s, msg))
distutils.errors.DistutilsExecError: Command "gcc -pthread /tmp/tmpt7qb9hvv/tmp/tmpt7qb9hvv/source.o -L/usr/lib64 -lcblas -o /tmp/tmpt7qb9hvv/a.out" failed with exit status 1
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 1722, in has_cblas
extra_postargs=info.get('extra_link_args', []))
File "/usr/local/lib/python3.5/distutils/ccompiler.py", line 734, in link_executable
debug, extra_preargs, extra_postargs, None, target_lang)
File "/usr/local/lib/python3.5/distutils/unixccompiler.py", line 196, in link
raise LinkError(msg)
distutils.errors.LinkError: Command "gcc -pthread /tmp/tmpt7qb9hvv/tmp/tmpt7qb9hvv/source.o -L/usr/lib64 -lcblas -o /tmp/tmpt7qb9hvv/a.out" failed with exit status 1
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.5/distutils/unixccompiler.py", line 194, in link
self.spawn(linker + ld_args)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/ccompiler.py", line 89, in <lambda>
m = lambda self, *args, **kw: func(self, *args, **kw)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/ccompiler.py", line 152, in CCompiler_spawn
raise DistutilsExecError('Command "%s" failed with exit status %d%s' % (cmd, s, msg))
distutils.errors.DistutilsExecError: Command "gcc -pthread /tmp/tmpt7qb9hvv/tmp/tmpt7qb9hvv/source.o -L/usr/lib64 -lblas -o /tmp/tmpt7qb9hvv/a.out" failed with exit status 1
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-iu_r4bvr/numpy/setup.py", line 403, in <module>
setup_package()
File "/tmp/pip-build-iu_r4bvr/numpy/setup.py", line 395, in setup_package
setup(**metadata)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/core.py", line 135, in setup
config = configuration()
File "/tmp/pip-build-iu_r4bvr/numpy/setup.py", line 167, in configuration
config.add_subpackage('numpy')
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/misc_util.py", line 1037, in add_subpackage
caller_level = 2)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/misc_util.py", line 1006, in get_subpackage
caller_level = caller_level + 1)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/misc_util.py", line 943, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "numpy/setup.py", line 10, in configuration
config.add_subpackage('core')
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/misc_util.py", line 1037, in add_subpackage
caller_level = 2)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/misc_util.py", line 1006, in get_subpackage
caller_level = caller_level + 1)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/misc_util.py", line 943, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "numpy/core/setup.py", line 832, in configuration
blas_info = get_info('blas_opt', 0)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 433, in get_info
return cl().get_info(notfound_action)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 625, in get_info
self.calc_info()
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 1649, in calc_info
blas_info = get_info('blas')
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 433, in get_info
return cl().get_info(notfound_action)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 625, in get_info
self.calc_info()
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 1685, in calc_info
lib = self.has_cblas(info)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 1728, in has_cblas
extra_postargs=info.get('extra_link_args', []))
File "/usr/local/lib/python3.5/distutils/ccompiler.py", line 734, in link_executable
debug, extra_preargs, extra_postargs, None, target_lang)
File "/usr/local/lib/python3.5/distutils/unixccompiler.py", line 196, in link
raise LinkError(msg)
distutils.errors.LinkError: Command "gcc -pthread /tmp/tmpt7qb9hvv/tmp/tmpt7qb9hvv/source.o -L/usr/lib64 -lblas -o /tmp/tmpt7qb9hvv/a.out" failed with exit status 1
----------------------------------------
Failed building wheel for numpy
Failed to build numpy
Installing collected packages: numpy, pandas
Running setup.py install for numpy
Complete output from command /usr/local/bin/python3.5 -c "import setuptools, tokenize;__file__='/tmp/pip-build-iu_r4bvr/numpy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-w3kiv6ws-record/install-record.txt --single-version-externally-managed --compile:
Note: if you need reliable uninstall behavior, then install
with pip instead of using `setup.py install`:
- `pip install .` (from a git repo or downloaded source
release)
- `pip install numpy` (last NumPy release on PyPi)
blas_opt_info:
blas_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
NOT AVAILABLE
blis_info:
customize UnixCCompiler
libraries blis not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
NOT AVAILABLE
openblas_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
NOT AVAILABLE
atlas_3_10_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries tatlas not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64/atlas', '/usr/lib64/sse2', '/usr/lib64', '/usr/lib/sse2', '/usr/lib']
NOT AVAILABLE
atlas_3_10_blas_info:
customize UnixCCompiler
libraries satlas not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64/atlas', '/usr/lib64/sse2', '/usr/lib64', '/usr/lib/sse2', '/usr/lib']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64/atlas', '/usr/lib64/sse2', '/usr/lib64', '/usr/lib/sse2', '/usr/lib']
NOT AVAILABLE
atlas_blas_info:
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64/atlas', '/usr/lib64/sse2', '/usr/lib64', '/usr/lib/sse2', '/usr/lib']
NOT AVAILABLE
accelerate_info:
NOT AVAILABLE
blas_info:
customize UnixCCompiler
customize UnixCCompiler
C compiler: gcc -pthread -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating /tmp/tmpr0p6x74m/tmp
creating /tmp/tmpr0p6x74m/tmp/tmpr0p6x74m
compile options: '-I/usr/local/include -I/usr/include -c'
gcc: /tmp/tmpr0p6x74m/source.c
/tmp/tmpr0p6x74m/source.c:1:19: warning: cblas.h: No such file or directory
/tmp/tmpr0p6x74m/source.c: In function ‘main’:
/tmp/tmpr0p6x74m/source.c:6: warning: implicit declaration of function ‘cblas_ddot’
gcc -pthread /tmp/tmpr0p6x74m/tmp/tmpr0p6x74m/source.o -L/usr/lib64 -lcblas -o /tmp/tmpr0p6x74m/a.out
/usr/bin/ld: cannot find -lcblas
collect2: ld returned 1 exit status
/usr/bin/ld: cannot find -lcblas
collect2: ld returned 1 exit status
gcc -pthread /tmp/tmpr0p6x74m/tmp/tmpr0p6x74m/source.o -L/usr/lib64 -lblas -o /tmp/tmpr0p6x74m/a.out
/tmp/tmpr0p6x74m/tmp/tmpr0p6x74m/source.o: In function `main':
/tmp/tmpr0p6x74m/source.c:6: undefined reference to `cblas_ddot'
collect2: ld returned 1 exit status
/tmp/tmpr0p6x74m/tmp/tmpr0p6x74m/source.o: In function `main':
/tmp/tmpr0p6x74m/source.c:6: undefined reference to `cblas_ddot'
collect2: ld returned 1 exit status
Running from numpy source directory.
/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py:625: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
Traceback (most recent call last):
File "/usr/local/lib/python3.5/distutils/unixccompiler.py", line 194, in link
self.spawn(linker + ld_args)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/ccompiler.py", line 89, in <lambda>
m = lambda self, *args, **kw: func(self, *args, **kw)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/ccompiler.py", line 152, in CCompiler_spawn
raise DistutilsExecError('Command "%s" failed with exit status %d%s' % (cmd, s, msg))
distutils.errors.DistutilsExecError: Command "gcc -pthread /tmp/tmpr0p6x74m/tmp/tmpr0p6x74m/source.o -L/usr/lib64 -lcblas -o /tmp/tmpr0p6x74m/a.out" failed with exit status 1
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 1722, in has_cblas
extra_postargs=info.get('extra_link_args', []))
File "/usr/local/lib/python3.5/distutils/ccompiler.py", line 734, in link_executable
debug, extra_preargs, extra_postargs, None, target_lang)
File "/usr/local/lib/python3.5/distutils/unixccompiler.py", line 196, in link
raise LinkError(msg)
distutils.errors.LinkError: Command "gcc -pthread /tmp/tmpr0p6x74m/tmp/tmpr0p6x74m/source.o -L/usr/lib64 -lcblas -o /tmp/tmpr0p6x74m/a.out" failed with exit status 1
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.5/distutils/unixccompiler.py", line 194, in link
self.spawn(linker + ld_args)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/ccompiler.py", line 89, in <lambda>
m = lambda self, *args, **kw: func(self, *args, **kw)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/ccompiler.py", line 152, in CCompiler_spawn
raise DistutilsExecError('Command "%s" failed with exit status %d%s' % (cmd, s, msg))
distutils.errors.DistutilsExecError: Command "gcc -pthread /tmp/tmpr0p6x74m/tmp/tmpr0p6x74m/source.o -L/usr/lib64 -lblas -o /tmp/tmpr0p6x74m/a.out" failed with exit status 1
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-iu_r4bvr/numpy/setup.py", line 403, in <module>
setup_package()
File "/tmp/pip-build-iu_r4bvr/numpy/setup.py", line 395, in setup_package
setup(**metadata)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/core.py", line 135, in setup
config = configuration()
File "/tmp/pip-build-iu_r4bvr/numpy/setup.py", line 167, in configuration
config.add_subpackage('numpy')
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/misc_util.py", line 1037, in add_subpackage
caller_level = 2)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/misc_util.py", line 1006, in get_subpackage
caller_level = caller_level + 1)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/misc_util.py", line 943, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "numpy/setup.py", line 10, in configuration
config.add_subpackage('core')
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/misc_util.py", line 1037, in add_subpackage
caller_level = 2)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/misc_util.py", line 1006, in get_subpackage
caller_level = caller_level + 1)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/misc_util.py", line 943, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "numpy/core/setup.py", line 832, in configuration
blas_info = get_info('blas_opt', 0)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 433, in get_info
return cl().get_info(notfound_action)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 625, in get_info
self.calc_info()
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 1649, in calc_info
blas_info = get_info('blas')
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 433, in get_info
return cl().get_info(notfound_action)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 625, in get_info
self.calc_info()
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 1685, in calc_info
lib = self.has_cblas(info)
File "/tmp/pip-build-iu_r4bvr/numpy/numpy/distutils/system_info.py", line 1728, in has_cblas
extra_postargs=info.get('extra_link_args', []))
File "/usr/local/lib/python3.5/distutils/ccompiler.py", line 734, in link_executable
debug, extra_preargs, extra_postargs, None, target_lang)
File "/usr/local/lib/python3.5/distutils/unixccompiler.py", line 196, in link
raise LinkError(msg)
distutils.errors.LinkError: Command "gcc -pthread /tmp/tmpr0p6x74m/tmp/tmpr0p6x74m/source.o -L/usr/lib64 -lblas -o /tmp/tmpr0p6x74m/a.out" failed with exit status 1
----------------------------------------
Command "/usr/local/bin/python3.5 -c "import setuptools, tokenize;__file__='/tmp/pip-build-iu_r4bvr/numpy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-w3kiv6ws-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-iu_r4bvr/numpy
Can someone help me which how to install this?? My end goal is to be able to install pandas.
Try installing cblas development files. On Debian based distribution it is libopenblas-dev.