I have three data.frames and a string as inputs to my function, I need the function search for the string in one of the dataframe and label the corresponding values in the density plot. The bg0, and bg1 has one column x and and which I used to plot the density plots.
bg0 = data.frame(x = c(1.2, 2.567, 0.9188, 0.52623))
bg1 = data.frame(x = c(7.98, 9.867, 4.678, 2.877))
matrix = data.frame(sample_id = c(AA, BB, CC, FF, EE),
BF = c(1.2, 2.567, 5.98, 7.098, 10.987))
For example, if search string is AA then the program must search it in matrix
data frame and label its sample_id
and BF
value on the density plot.
Here is what I tried,
plotter <- function(bg0, bg1, matrix, string){
if (string %in% matrix$sample_id) {
p1 = ggplot(data = bg0, aes(x=x,fill = "blue")) +
geom_density(alpha = .3) +
geom_density(data = bg1, aes(x=x,fill = "green")) +
geom_label(label=sprintf('n = %s', matrix$sample_id))
pdf(outfile, width=50, height=20)
print(p1)
dev.off()
}}
It would be great if someone can walk me through with how to pass the search string to a matrix and then feeding the results into the ggplot geom_label
of annotate
to label it based on where it is located in the density graph. Any help would be appreciated.
Edited:
plotter <- function(bg0, bg1, matrix, string){
if (nrow(matrix[which(matrix$sample_id==string),])!=0) {
mylabel = paste('BF = ',matrix[which(matrix$sample_id==string),]$BF,sep=" ")
p1 = ggplot(data = bg0, aes(x=x,fill = "blue") )+
geom_density(alpha = .3) +
geom_density(data = bg1, aes(x=x,fill = "green"))+
geom_vline(xintercept = matrix[which(matrix$sample_id==string),]$BF,
linetype="dotted", color = "blue", size=1.5)+
geom_text(aes(x=matrix[which(matrix$sample_id==string),]$BF,
label=mylabel, y=.6), colour="blue",hjust = -0.5)
#pdf(outfile, width=50, height=20)
return(print(p1))
dev.off()
}
}
plotter(bg0, bg1, matrix, "BB")