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output-formattingniftynet

How to change output format for Niftynet?

Is it possible to set output format in configuration file for Niftynet? e.g. I would like to have my output as png.

My output is currently in .nii.gz format.

Thank you.

Solution

  • You can read the output array in Python with NiBabel:

    import nibabel
data_array = nibabel.load('output_file.nii.gz').get_data()
# shape of data_array is [width, height, depth, time, num_channels]

    and save the array as any other image formats.