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pythonnumpymatrixpytorchdiagonal

Getting diagonal "stripe" from matrix in NumPy or PyTorch


I need to get the diagonal "stripe" of a matrix. Say I have a matrix of size KxN (K>N):

[[ 0  1  2]
 [ 3  4  5]
 [ 6  7  8]
 [ 9 10 11]]

From it I need to extract a diagonal stripe, in this case, a matrix MxV size that is created by truncating the original one:

[[ 0  x  x]
 [ 3  4  x]
 [ x  7  8]
 [ x  x  11]]

So the result matrix is:

[[ 0  4  8]
 [ 3  7  11]]

I could define a bolean mask like so:

import numpy as np

X=np.arange(12).reshape(4,3)
mask=np.asarray([
  [ True,  False,  False],
  [ True,  True,  False], 
  [ False, True,  True], 
  [ False, False,  True]
])

>>> X
array([[ 0,  1,  2],
       [ 3,  4,  5],
       [ 6,  7,  8],
       [ 9, 10, 11]])

>>> X.T[mask.T].reshape(3,2).T
array([[ 0,  4,  8],
       [ 3,  7, 11]])

But I don't see how such a mask could be automatically generated to an arbitrary KxN matrix (e.g. 39x9, 360x96)

Is there a function that does this automatically either in numpy, scipy or pytorch?


Additional question: is it possible to get a "reverse stripe" instead? i.e.

[[ x   x   2]
 [ x   4   5]
 [ 6   7   x]
 [ 9   x   x]]

Solution

  • stride_tricks do the trick:

    >>> import numpy as np
    >>> 
    >>> def stripe(a):
    ...    a = np.asanyarray(a)
    ...    *sh, i, j = a.shape
    ...    assert i >= j
    ...    *st, k, m = a.strides
    ...    return np.lib.stride_tricks.as_strided(a, (*sh, i-j+1, j), (*st, k, k+m))
    ... 
    >>> a = np.arange(24).reshape(6, 4)
    >>> a
    array([[ 0,  1,  2,  3],
           [ 4,  5,  6,  7],
           [ 8,  9, 10, 11],
           [12, 13, 14, 15],
           [16, 17, 18, 19],
           [20, 21, 22, 23]])
    >>> stripe(a)
    array([[ 0,  5, 10, 15],
           [ 4,  9, 14, 19],
           [ 8, 13, 18, 23]])
    

    If a is an array this creates a writable view, meaning that if you feel so inclined you can do things like

    >>> stripe(a)[...] *= 10
    >>> a
    array([[  0,   1,   2,   3],
           [ 40,  50,   6,   7],
           [ 80,  90, 100,  11],
           [ 12, 130, 140, 150],
           [ 16,  17, 180, 190],
           [ 20,  21,  22, 230]])
    

    UPDATE: bottom-left to top-right stripes can be obtained in the same spirit. Only minor complication: It is not based at the same address as the original array.

    >>> def reverse_stripe(a):
    ...     a = np.asanyarray(a)
    ...     *sh, i, j = a.shape
    ...     assert i >= j
    ...     *st, k, m = a.strides
    ...     return np.lib.stride_tricks.as_strided(a[..., j-1:, :], (*sh, i-j+1, j), (*st, k, m-k))
    ... 
    >>> a = np.arange(24).reshape(6, 4)
    >>> reverse_stripe(a)
    array([[12,  9,  6,  3],
           [16, 13, 10,  7],
           [20, 17, 14, 11]])