Quite suddenly, readthedocs has become unable to build our project. As far as I can see it's due to scipy 1.0.0, and for some reason it thinks it's running on windows? All builds fail with the error below:
Installed /home/docs/checkouts/readthedocs.org/user_builds/pints/envs/latest/lib/python3.5/site-packages/pints-0.0.1-py3.5.egg
Processing dependencies for pints==0.0.1
Searching for scipy>=0.13
Reading https://pypi.python.org/simple/scipy/
Downloading https://pypi.python.org/packages/d0/73/76fc6ea21818eed0de8dd38e1e9586725578864169a2b31acdeffb9131c8/scipy-1.0.0.tar.gz#md5=53fa34bd3733a9a4216842b6000f7316
Best match: scipy 1.0.0
Processing scipy-1.0.0.tar.gz
Writing /tmp/easy_install-2lr9ts8l/scipy-1.0.0/setup.cfg
Running scipy-1.0.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-2lr9ts8l/scipy-1.0.0/egg-dist-tmp-v00htrtw
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
/tmp/easy_install-2lr9ts8l/scipy-1.0.0/setup.py:323: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates
warnings.warn("Unrecognized setuptools command, proceeding with "
/home/docs/checkouts/readthedocs.org/user_builds/pints/envs/latest/lib/python3.5/site-packages/numpy/distutils/system_info.py:624: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
/home/docs/checkouts/readthedocs.org/user_builds/pints/envs/latest/lib/python3.5/site-packages/numpy/distutils/system_info.py:624: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
self.calc_info()
/home/docs/checkouts/readthedocs.org/user_builds/pints/envs/latest/lib/python3.5/site-packages/numpy/distutils/system_info.py:624: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
self.calc_info()
Running from scipy source directory.
error: no lapack/blas resources found
Anyone have any ideas how to fix this?
Thanks, Michael
This happened because we didn't specify scipy in the requirements.txt that readthedocs was using!
(The reason we didn't was that we had a separate requirements-docs.txt that didn't list stuff already in requirements.txt. Solved the issue by adding a line -r requirements.txt at the top of requirements-docs.txt to include everything from requirements.txt)