I am trying to create an article for publication with graphs, tables, cross-referencing and references.
The publishers require the articles to be in docx/doc format.
I have used bookdown::word_document2 and previously had no problem compiling the document.
Suddenly the document has stopped compiling and produces an error.
I have reproduced the problem with an MWE:
---
title: "MWE"
author: "JEB"
date: "13th November 2017"
output:
bookdown::word_document2:
fig_caption: true
---
## Including Plots
You can also embed plots, for example \@ref(fig:pressure)
```{r pressure, echo=FALSE, fig.cap="Test caption"}
plot(pressure)
```
If I include fig.cap="Test caption" I get the following error:
Error in parse_fig_labels(x, global) : There are multiple labels on one line: (#fig:pressure), (#fig:pressure) Calls: ... -> process_markdown -> parse_fig_labels Execution halted
If I remove the fig.cap="Test caption", I get the following:
Output created: test.docx Warning message: The label(s) fig:pressure not found
Is this a bug or am I doing something wrong?
[EDIT] Here is my sessionInfo()
sessionInfo()
R version 3.4.2 (2017-09-28)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Arch Linux
Matrix products: default
BLAS: /usr/lib/libblas.so.3.7.1
LAPACK: /usr/lib/liblapack.so.3.7.1
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] grid stats graphics grDevices utils datasets methods base
other attached packages:
[1] bindrcpp_0.2 ez_4.4-0 knitr_1.17
reshape2_1.4.2 pastecs_1.3-18
[6] boot_1.3-20 car_2.1-5 compute.es_0.2-4
gridExtra_2.3 ggplot2_2.2.1
[11] xtable_1.8-2 data.table_1.10.4-3 dplyr_0.7.4
loaded via a namespace (and not attached):
[1] Rcpp_0.12.13 highr_0.6 compiler_3.4.2 nloptr_1.0.4 plyr_1.8.4
[6] bindr_0.1 tools_3.4.2 digest_0.6.12 lme4_1.1-14 evaluate_0.10.1
[11] tibble_1.3.4 gtable_0.2.0 nlme_3.1-131 lattice_0.20-35 mgcv_1.8-22
[16] pkgconfig_2.0.1 rlang_0.1.4 Matrix_1.2-11 yaml_2.1.14 parallel_3.4.2
[21] SparseM_1.77 stringr_1.2.0 MatrixModels_0.4-1 rprojroot_1.2 nnet_7.3-12
[26] glue_1.2.0 R6_2.2.2 bookdown_0.5 rmarkdown_1.7 minqa_1.2.4
[31] magrittr_1.5 backports_1.1.1 htmltools_0.3.6 scales_0.5.0 MASS_7.3-47
[36] splines_3.4.2 assertthat_0.2.0 pbkrtest_0.4-7 colorspace_1.3-2 labeling_0.3
[41] quantreg_5.34 stringi_1.1.5 lazyeval_0.2.1 munsell_0.4.3
This was because you were using Pandoc 2.0, and bookdown was not fully compatible with this new version of Pandoc yet. I just pushed a fix on Github, and you can install the development version with devtools::install_github("rstudio/bookdown").