This worked fine with previous intelliJ versions. Logs tab is not activated after GlassFish is started. Restore Layout button does not help.
UPDATE
Here is a part of idea.log with exceptions(not sure if it's related to the issue):
*2017-02-09 15:19:01,969 [3649406] INFO - notification.NotificationGroup - Notification group JavaEE is already registered
java.lang.Throwable
at com.intellij.notification.NotificationGroup.<init>(NotificationGroup.java:65)
at com.intellij.notification.NotificationGroup.<init>(NotificationGroup.java:50)
at com.intellij.notification.NotificationGroup.toolWindowGroup(NotificationGroup.java:82)
at com.intellij.notification.NotificationGroup.toolWindowGroup(NotificationGroup.java:87)
at com.intellij.javaee.oss.server.JavaeeServerInstanceImpl.createConnectErrorNotification(JavaeeServerInstanceImpl.java:358)
at com.intellij.javaee.oss.server.JavaeeServerInstanceImpl$ConnectLogger.reportError(JavaeeServerInstanceImpl.java:544)
at com.intellij.javaee.oss.server.JavaeeServerInstanceImpl.disconnect(JavaeeServerInstanceImpl.java:186)
at com.intellij.javaee.oss.server.JavaeeServerConnector.shutdown(JavaeeServerConnector.java:115)
at com.intellij.javaee.run.execution.J2EEProcessHandlerHelper.destroy(J2EEProcessHandlerHelper.java:199)
at com.intellij.javaee.run.execution.LocalJavaeeServerProcessHandler.destroyProcessImpl(LocalJavaeeServerProcessHandler.java:157)
at com.intellij.javaee.run.execution.LocalJavaeeServerProcessHandler.detachProcessImpl(LocalJavaeeServerProcessHandler.java:167)
at com.intellij.execution.process.ProcessHandler$2.run(ProcessHandler.java:126)
at com.intellij.execution.process.ProcessHandler$TasksRunner.execute(ProcessHandler.java:260)
at com.intellij.execution.process.ProcessHandler.detachProcess(ProcessHandler.java:121)
at com.intellij.javaee.run.execution.LocalJavaeeServerProcessHandler.destroyProcess(LocalJavaeeServerProcessHandler.java:78)
at com.intellij.javaee.run.execution.J2EEProcessHandlerWrapper$4.onProcess(J2EEProcessHandlerWrapper.java:194)
at com.intellij.javaee.run.execution.J2EEProcessHandlerWrapper$ProcessCall.lambda$new$0(J2EEProcessHandlerWrapper.java:360)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at com.intellij.util.concurrency.BoundedTaskExecutor$2.run(BoundedTaskExecutor.java:212)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
2017-02-09 15:19:14,501 [3661938] INFO - ij.compiler.impl.CompileDriver - COMPILATION STARTED (BUILD PROCESS)
2017-02-09 15:19:14,627 [3662064] INFO - j.compiler.server.BuildManager - BUILDER_PROCESS [system]: "C:\Program Files\Java\jbsdk8u112b657_windows_x64\jre\bin\java" -Xmx700m -Djava.awt.headless=true -Djava.endorsed.dirs=\"\"... (many lines)
2017-02-09 15:19:15,084 [3662521] INFO - j.compiler.server.BuildManager - BUILDER_PROCESS [stdout]: Build process started. Classpath: C:/Program Files (x86)/JetBrains/IntelliJ IDEA 171.2014.21/lib/jps-launcher.jar;C:/Program Files/Java/jbsdk8u112b657_windows_x64/lib/tools.jar;C:/Program Files (x86)/JetBrains/IntelliJ IDEA 171.2014.21/lib/optimizedFileManager.jar
2017-02-09 15:19:25,665 [3673102] INFO - lij.compiler.impl.CompilerUtil - COMPILATION FINISHED (BUILD PROCESS); Errors: 0; warnings: 0 took 11175 ms: 0 min 11sec
2017-02-09 15:19:25,666 [3673103] INFO - CompilerBackwardReferenceIndex - C:\Users\***\.IntelliJIdea2017.1\system\compile-server\***_pom_b5d31051\backward-refs\version (The system cannot find the path specified)
java.io.FileNotFoundException: C:\Users\***\.IntelliJIdea2017.1\system\compile-server\***_pom_b5d31051\backward-refs\version (The system cannot find the path specified)
at java.io.FileInputStream.$$YJP$$open0(Native Method)
at java.io.FileInputStream.open0(FileInputStream.java)
at java.io.FileInputStream.open(FileInputStream.java:195)
at java.io.FileInputStream.<init>(FileInputStream.java:138)
at org.jetbrains.jps.backwardRefs.CompilerBackwardReferenceIndex.versionDiffers(CompilerBackwardReferenceIndex.java:155)
at com.intellij.compiler.backwardRefs.CompilerReferenceReader.exists(CompilerReferenceReader.java:109)
at com.intellij.compiler.backwardRefs.CompilerReferenceReader.create(CompilerReferenceReader.java:116)
at com.intellij.compiler.backwardRefs.CompilerReferenceServiceImpl.a(CompilerReferenceServiceImpl.java:359)
at com.intellij.compiler.backwardRefs.CompilerReferenceServiceImpl.access$600(CompilerReferenceServiceImpl.java:70)
at com.intellij.compiler.backwardRefs.CompilerReferenceServiceImpl$2.b(CompilerReferenceServiceImpl.java:126)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at com.intellij.util.concurrency.BoundedTaskExecutor$2.run(BoundedTaskExecutor.java:212)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
2017-02-09 15:19:25,669 [3673106] INFO - ntellij.analysis.SonarLintTask - Running SonarLint Analysis for 9 files in 2 modules
2017-02-09 15:19:25,715 [3673152] INFO - j.compiler.server.BuildManager - BUILDER_PROCESS [system]: "C:\Program Files\Java\jbsdk8u112b657_windows_x64\jre\bin\java" -Xmx700m -Djava.awt.headless=true -Djava.endorsed.dirs=\"\".... (many lines)
2017-02-09 15:19:26,196 [3673633] INFO - j.compiler.server.BuildManager - BUILDER_PROCESS [stdout]: Build process started. Classpath: C:/Program Files (x86)/JetBrains/IntelliJ IDEA 171.2014.21/lib/jps-launcher.jar;C:/Program Files/Java/jbsdk8u112b657_windows_x64/lib/tools.jar;C:/Program Files (x86)/JetBrains/IntelliJ IDEA 171.2014.21/lib/optimizedFileManager.jar
2017-02-09 15:19:27,597 [3675034] INFO - svn.commandLine.CommandRuntime - Detected warning - svn: warning: W155010: The node 'C:\***\Pom\.idea\sonarlint\.sonartmp' was not found.
2017-02-09 15:19:31,779 [3679216] INFO - ntellij.analysis.SonarLintTask - SonarLint analysis done
2017-02-09 15:19:58,557 [3705994] INFO - svn.commandLine.CommandRuntime - Detected warning - svn: warning: W155010: The node 'C:\***\Pom\.idea\sonarlint\.sonartmp' was not found.*
I had a .bat script being executed before build process which interfered logs.