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rapache-sparksparkrbigdata

How to apply a function to each row in SparkR?


I have a file in CSV format which contains a table with column "id", "timestamp", "action", "value" and "location". I want to apply a function to each row of the table and I've already written the code in R as follows:

user <- read.csv(file_path,sep = ";")
num <- nrow(user)
curLocation <- "1"
for(i in 1:num) {
    row <- user[i,]
    if(user$action != "power")
        curLocation <- row$value
    user[i,"location"] <- curLocation
}

The R script works fine and now I want to apply it SparkR. However, I couldn't access the ith row directly in SparkR and I couldn't find any function to manipulate every row in SparkR documentation.

Which method should I use in order to achieve the same effect as in the R script?

In addition, as advised by @chateaur, I tried to code using dapply function as follows:

curLocation <- "1"
schema <- structType(structField("Sequence","integer"), structField("ID","integer"), structField("Timestamp","timestamp"), structField("Action","string"), structField("Value","string"), structField("Location","string"))
setLocation <- function(row, curLoc) {
    if(row$Action != "power|battery|level"){
        curLoc <- row$Value
    }
    row$Location <- curLoc
}
bw <- dapply(user, function(row) { setLocation(row, curLocation)}, schema)
head(bw)

Then I got an error: error message

I looked up the warning message the condition has length > 1 and only the first element will be used and I found something https://stackoverflow.com/a/29969702/4942713. It made me wonder whether the row parameter in the dapply function represent an entire partition of my data frame instead of one single row? Maybe dapply function is not a desirable solution?

Later, I tried to modify the function as advised by @chateaur. Instead of using dapply, I used dapplyCollect which saves me the effort of specifying the schema. It works!

changeLocation <- function(partitionnedDf) {
    nrows <- nrow(partitionnedDf)
    curLocation <- "1"
    for(i in 1:nrows){
        row <- partitionnedDf[i,]
        if(row$action != "power") {
            curLocation <- row$value
        }
    partitionnedDf[i,"location"] <- curLocation
    }
    partitionnedDf
}

bw <- dapplyCollect(user, changeLocation)

Solution

  • Scorpion775,

    You should share your sparkR code. Don't forget that data isn't manipulated the same way in R and sparkR.

    From : http://spark.apache.org/docs/latest/sparkr.html,

    df <- read.df(csvPath, "csv", header = "true", inferSchema = "true", na.strings = "NA")
    

    Then you can look at dapply function here : https://spark.apache.org/docs/2.1.0/api/R/dapply.html

    Here is a working example :

    changeLocation <- function(partitionnedDf) {
        nrows <- nrow(partitionnedDf)
        curLocation <- as.integer(1)
    
        # Loop over each row of the partitionned data frame
        for(i in 1:nrows){
            row <- partitionnedDf[i,]
    
            if(row[1] != "power") {
                curLocation <- row[2]
            }
            partitionnedDf[i,3] <- curLocation
        }
    
        # Return modified data frame
        partitionnedDf
    }
    
    # Load data
    df <- read.df("data.csv", "csv", header="false", inferSchema = "true")
    
    head(collect(df))
    
    # Define schema of dataframe
    schema <- structType(structField("action", "string"), structField("value", "integer"),
                         structField("location", "integer"))
    
    # Change location of each row                    
    df2 <- dapply(df, changeLocation, schema)
    
    head(df2)