App Installation failed - The application does not have a valid signature on build

I am getting following error on build:

The application does not have a valid signature

After playing with it a little while I have found following:

error appears only after building app with no changes - that is, if I encounter crash during development and try to build again it will show error
in order to build again I need to add space or new line and after that it will work
it will work after full clean -> build. This is not really acceptable since project is huge (over 300 files) and build time is around 20 mins with cocoapods and what not.
Happens on all kind of iOS, but only on device. On simulator it is working correctly. Tried from 8.0 to 10.2 iOS versions.
Clean build will fix for only one time, after that if I try to build the same code again, same error occurs.

Other relevant information:

Xcode 8.2 ( happened on 8.0 and 8.1 as well)
Language is Swift 3
MacOS is Sierra (10.12.1)
Certificates used for signing are enterprise

Already tried all proposed solutions online including SO (e.g. App installation failed) but no luck.

My question is: How can I resolve this issue so I am able to build without changing code each time I want to build? I assume that this has something to do with Build settings...

Solution

It seems that this is a known issue with Xcode. I haven't experienced it with our project, so it may be related to CocoaPods, or something else that is specific to your project. I remembered seeing this problem on Apple's forums here.

Though more of a workaround than a solution, you can force the app to rebuild each time by adding a BuildDate.plist file, adding a build phase to throw the current date / time into the plist file. This change is enough to trigger enough of a rebuild so that the code signing bug doesn't affect you. And it should cause a recompile of anything time consuming.

This should save you and your team from having to make a simple change to the code when this happens.