I have a problem I cannot solve. I am trying to create an animation using gganimate with geom_contour. When I plot the data frame as a single "frame" it works with no problems; however when I add the "frame" aesthetic and try to run it with gganimate, geom_contour fails to work. I am not sure what is happening after googling around as it is the exact same data frame. Additionally it works fine with geom_raster. I have provided a very small example that represents what I am actually trying to do albeit at a smaller scale.
Any help would be appreciated. Thanks!
library(mvtnorm)
library(ggplot2)
library(gganimate)
generateLattice <- function(theta,offset,increment){
dim1 <- c(seq(from=theta[1]-offset,to=theta[1]-increment,by=increment),seq(from=theta[1],to=theta[1]+offset,by=increment))
dim2 <- c(seq(from=theta[2]-offset,to=theta[2]-increment,by=increment),seq(from=theta[2],to=theta[2]+offset,by=increment))
lattice <- expand.grid(dim1,dim2)
return(lattice)
}
testLattice <- generateLattice(c(5,5),10,0.05)
testPDF <- apply(testLattice,1,function(x){
dmvnorm(x=x,mean=c(5.5,4.5),sigma=matrix(c(1,0.25,0.25,1),2,2))
})
testLattice$PDF <- testPDF
testLattice$iter <- 1
testLattice1 <- generateLattice(c(6,6),10,0.05)
testPDF1 <- apply(testLattice1,1,function(x){
dmvnorm(x=x,mean=c(5.0,4.75),sigma=matrix(c(0.9,0.15,0.15,1.2),2,2))
})
testLattice1$PDF <- testPDF
testLattice1$iter <- 2
testLatticeGIF <- rbind(testLattice,testLattice1)
ggplot(testLatticeGIF[testLatticeGIF$iter==1,],aes(x=Var1,y=Var2,z=PDF)) +
geom_contour()
#works
p <- ggplot(testLatticeGIF,aes(x=Var1,y=Var2,fill=PDF,frame=iter)) +
geom_raster()
gganimate::gg_animate(p)
#fails
p <- ggplot(testLatticeGIF,aes(x=Var1,y=Var2,z=PDF,frame=iter)) +
geom_contour()
gganimate::gg_animate(p)
The reason is simply that geom_contour()
does not know to handle the data in the form that you pass them to it. The following two plots do both not work:
ggplot(testLatticeGIF,aes(x=Var1,y=Var2,z=PDF)) +
geom_contour()
## Warning message:
## Computation failed in `stat_contour()`:
## dimensions of 'x', 'y' and 'z' do not match
ggplot(testLatticeGIF,aes(x=Var1,y=Var2,z=PDF,colour=iter)) +
geom_contour()
## Warning message:
## Computation failed in `stat_contour()`:
## dimensions of 'x', 'y' and 'z' do not match
I often find it helpful to use, say, colour
instead of frame
. If this does not work, it is a strong hint that the issue is not with gganimate
. Here, the problem is that you need to use the group
aesthetic such that geom_contour
knows which data points belong together:
ggplot(testLatticeGIF,aes(x=Var1,y=Var2,z=PDF,group=iter,colour=iter)) +
geom_contour()
And now it also works with the animation:
p <- ggplot(testLatticeGIF,aes(x=Var1,y=Var2,z=PDF,group=iter,frame=iter)) +
geom_contour()
gganimate::gg_animate(p)