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rmatrixdistancediagonaldistance-matrix

Extract diagonals from a distance matrix in R

I would like to know how can I extract the values of the first diagonal from a distance matrix.

For example:

> mymatrix
     [,1] [,2]
[1,]    1    2
[2,]    3    4
[3,]    6    4
[4,]    8    6

> dist(mymatrix)

         1        2        3
2 2.828427                  
3 5.385165 3.000000         
4 8.062258 5.385165 2.828427

I want to get in a vector the values: 2.828427, 3.000000, 2.828427

Thanks!

Solution

  • One work around is to convert the dist object to matrix and then extract elements where row index is one larger than the column index:

    mat = as.matrix(dist(mymatrix))
mat[row(mat) == col(mat) + 1]
# [1] 2.828427 3.000000 2.828427