As you can on the example bootlint is fine and all IDs unique but two diffrent collapsable accordion triggers each other. Still looking for solution.
Live example : http://codepen.io/bertanyaman/pen/NNOLyG
<div class="container-fluid">
<div class="row">
<div class="col-sm-6">
<div id="accordion" role="tablist" aria-multiselectable="true">
<div class="panel panel-default">
<div class="panel-heading" role="tab" id="headingOne">
<h4 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion"
href="#collapseOne" aria-expanded="true"
aria-controls="collapseOne">Collapsible Group Item #1</a>
</h4>
</div>
<div id="collapseOne" class="panel-collapse collapse in"
role="tabpanel" aria-labelledby="headingOne">
Anim pariatur cliche reprehenderit...
</div>
</div>
<div class="panel panel-default">
<div class="panel-heading" role="tab" id="headingTwo">
<h4 class="panel-title">
<a class="collapsed" data-toggle="collapse"
data-parent="#accordion" href="#collapseTwo"
aria-expanded="false" aria-controls="collapseTwo">Collapsible Group Item #2</a>
</h4>
</div>
<div id="collapseTwo" class="panel-collapse collapse"
role="tabpanel" aria-labelledby="headingTwo">
Anim pariatur cliche reprehenderit...
</div>
</div>
<div class="panel panel-default">
<div class="panel-heading" role="tab" id="headingThree">
<h4 class="panel-title">
<a class="collapsed" data-toggle="collapse"
data-parent="#accordion" href="#collapseThree"
aria-expanded="false" aria-controls="collapseThree">Collapsible Group Item #3</a>
</h4>
</div>
<div id="collapseThree" class="panel-collapse collapse"
role="tabpanel" aria-labelledby="headingThree">
Anim pariatur cliche reprehenderit...
</div>
</div>
</div>
</div>
<div class="col-sm-6">
<div id="accordion2" role="tablist" aria-multiselectable="true">
<div class="panel panel-default">
<div class="panel-heading" role="tab" id="headingOne2">
<h4 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion2"
href="#collapseOne2" aria-expanded="true"
aria-controls="collapseOne2">Collapsible Group Item
#1</a>
</h4>
</div>
<div id="collapseOne2" class="panel-collapse collapse in"
role="tabpanel" aria-labelledby="headingOne2">
Anim pariatur cliche reprehenderit...
</div>
</div>
<div class="panel panel-default">
<div class="panel-heading" role="tab" id="headingTwo2">
<h4 class="panel-title">
<a class="collapsed" data-toggle="collapse"
data-parent="#accordion2" href="#collapseTwo2"
aria-expanded="false" aria-controls="collapseTwo2">Collapsible Group Item #2</a>
</h4>
</div>
<div id="collapseTwo2" class="panel-collapse collapse"
role="tabpanel" aria-labelledby="headingTwo2">
Anim pariatur cliche reprehenderit...
</div>
</div>
<div class="panel panel-default">
<div class="panel-heading" role="tab" id="headingThree2">
<h4 class="panel-title">
<a class="collapsed" data-toggle="collapse"
data-parent="#accordion2" href="#collapseThree2"
aria-expanded="false" aria-controls="collapseThree2">Collapsible Group Item #3</a>
</h4>
</div>
<div id="collapseThree2" class="panel-collapse collapse"
role="tabpanel" aria-labelledby="headingThree2">
Anim pariatur cliche reprehenderit...
</div>
</div>
</div>
</div>
</div>
</div>
I see your code example on CodePen is using TWBS 4-alpha2 versions of the css and js. If you revert to TWBS 3.3.6 (and JQuery 1) then your code works.
See this prior question 25359335, and it's JSFiddle
I copied this working code to your CodePen and it broke too, but then I reverted to 3.3.6 and it worked again.
This is a known bug in V4
<sorry> :( </sorry>