We've got some nonnegative numbers. We want to find the pair with maximum gcd. actually this maximum is more important than the pair! For example if we have:
2 4 5 15
gcd(2,4)=2
gcd(2,5)=1
gcd(2,15)=1
gcd(4,5)=1
gcd(4,15)=1
gcd(5,15)=5
The answer is 5.
There is a solution that would take O(n):
Let our numbers be a_i. First, calculate m=a_0*a_1*a_2*.... For each number a_i, calculate gcd(m/a_i, a_i). The number you are looking for is the maximum of these values.
I haven't proved that this is always true, but in your example, it works:
m=2*4*5*15=600,
max(gcd(m/2,2), gcd(m/4,4), gcd(m/5,5), gcd(m/15,15))=max(2, 2, 5, 5)=5
NOTE: This is not correct. If the number a_i has a factor p_j repeated twice, and if two other numbers also contain this factor, p_j, then you get the incorrect result p_j^2 insted of p_j. For example, for the set 3, 5, 15, 25, you get 25 as the answer instead of 5.
However, you can still use this to quickly filter out numbers. For example, in the above case, once you determine the 25, you can first do the exhaustive search for a_3=25 with gcd(a_3, a_i) to find the real maximum, 5, then filter out gcd(m/a_i, a_i), i!=3 which are less than or equal to 5 (in the example above, this filters out all others).
Added for clarification and justification:
To see why this should work, note that gcd(a_i, a_j) divides gcd(m/a_i, a_i) for all j!=i.
Let's call gcd(m/a_i, a_i) as g_i, and max(gcd(a_i, a_j),j=1..n, j!=i) as r_i. What I say above is g_i=x_i*r_i, and x_i is an integer. It is obvious that r_i <= g_i, so in n gcd operations, we get an upper bound for r_i for all i.
The above claim is not very obvious. Let's examine it a bit deeper to see why it is true: the gcd of a_i and a_j is the product of all prime factors that appear in both a_i and a_j (by definition). Now, multiply a_j with another number, b. The gcd of a_i and b*a_j is either equal to gcd(a_i, a_j), or is a multiple of it, because b*a_j contains all prime factors of a_j, and some more prime factors contributed by b, which may also be included in the factorization of a_i. In fact, gcd(a_i, b*a_j)=gcd(a_i/gcd(a_i, a_j), b)*gcd(a_i, a_j), I think. But I can't see a way to make use of this. :)
Anyhow, in our construction, m/a_i is simply a shortcut to calculate the product of all a_j, where j=1..1, j!=i. As a result, gcd(m/a_i, a_i) contains all gcd(a_i, a_j) as a factor. So, obviously, the maximum of these individual gcd results will divide g_i.
Now, the largest g_i is of particular interest to us: it is either the maximum gcd itself (if x_i is 1), or a good candidate for being one. To do that, we do another n-1 gcd operations, and calculate r_i explicitly. Then, we drop all g_j less than or equal to r_i as candidates. If we don't have any other candidate left, we are done. If not, we pick up the next largest g_k, and calculate r_k. If r_k <= r_i, we drop g_k, and repeat with another g_k'. If r_k > r_i, we filter out remaining g_j <= r_k, and repeat.
I think it is possible to construct a number set that will make this algorithm run in O(n^2) (if we fail to filter out anything), but on random number sets, I think it will quickly get rid of large chunks of candidates.