I'm trying to use the SemiMarkov package and I want to change one small line of code in there. I've done some digging via:
getAnywhere("semiMarkov")
& I've identified that I want to change this line:
hessian <- diag(ginv(hessian(V, solution)))
to try something like:
hessian <- diag(ginv(pracma::hessian(V, solution)))
How do I go about this? Do I need to rebuild the package from scratch, and if so do I need rTools etc for this, or is there a simple-ish workaround (I'm a relevant R novice)? I've done some searching online and can't find anything obvious. Any ideas/pointers gratefully appreciated.
Starting with downloading the package source from CRAN.
Download and extract the source:
wget https://cran.r-project.org/src/contrib/SemiMarkov_1.4.2.tar.gz
tar -xvzf SemiMarkov_1.4.2.tar.gz
This should result in a directory named SemiMarkov
. Open up the source (cd SemiMarkov
), and modify as necessary.
Next, build the changes:
cd ..
R CMD build SemiMarkov/
This will result in a new archive file named SemiMarkov_1.4.2.tar.gz
.
Lastly, install your modified archive:
R CMD INSTALL SemiMarkov_1.4.2.tar.gz
I'm less familiar with the Windows platform. *nix tooling is available in Cygwin, but it's painful. Instead, as Josh O'Brien points out, you should follow the Windows-specific instructions in the R Installation and Administration manual.