I first time use Git. I use PhpStorm as IDE
When I commit a project or even recreate and commit
the 'basic' folder is gray.
And in PHP Storm it's also have a different color.
Solution
perhaps :
PSR-O automatically detection and colors
you work a new project with code other project
wrong config git for your project
color PHPStorm for notice you that change anything
what the 'change view' PHPStorm notice ?
How many .git directory are you in a project ?
Are you modify the color config for anything into PHPStorm ?