I have some problems, implementing ggplot2 into shiny apps
I cannot get the code working in the example I give below. For some reason when I use aes_string
it does not find factor1
and when I use aes
, it does not find params()
. In the file, fed with my data, this step works. Sorry for that.
I want to use qqplot2 to plot the data of my project. When I take the data and plot them outside of shiny apps, everything is fine. When I implement the code in shiny apps it changes my axis from a factorial one to a contentious one.
I am changing the factors on the
x-axis according to the user input with with "radioButtons". When I
use stripchart(), it works perfectly. When I use ggplot instead, it
works fine in the first place, but when I change the the factor (change the value of the radioButton) it does not find the input object (input$strain
).
Sorry for the long post. Your help is very much appreciated.
Here is my code:
ui.R
library(shiny)
# Define UI for dataset viewer application
ui<-(fluidPage(
titlePanel("My project"),
sidebarLayout(
sidebarPanel(
selectInput("dataset", "Choose a dataset:",
choices = c("exp1","exp2", "exp3"),selected="exp1"),
selectInput(inputId = "param",choices = c("Repsonse A","Response B"),label = "Choose repsonse",selected="Repsonse A"),
selectInput("factors", "Choose grouping factor:",
choices = c("No grouping","Block"),selected="No grouping"),
radioButtons(inputId = "fac",choice=c("factor1 on x-axis","factor2 on x-axis"), "Choose type of x-axis")
),
mainPanel(
h3(textOutput("caption", container = span)),
plotOutput("strip")
)
)
))
and server.R
library(shiny)
library(datasets)
library(ggplot2)
server<-(function(input, output,clientData, session) {
df<-data.frame("respondA"=runif(20, min=0, max=0.4),"respondB"=runif(20, min=0, max=0.4),"factor1"="A","factor2"="B","replicate"=as.factor(c(1:20)))
df2<-data.frame("respondA"=runif(20, min=0, max=0.4),"respondB"=runif(20, min=0, max=0.4),"factor1"="A","factor2"="B","replicate"=as.factor(c(1:20)))
df3<-data.frame("respondA"=runif(20, min=0, max=0.4),"respondB"=runif(20, min=0, max=0.4),"factor1"="A","factor2"="B","replicate"=as.factor(c(1:20)))
datasetInput <- reactive({
switch(input$dataset,
"exp1" = df,
"exp2" = df2,
"exp3" = df3)
})
params <- reactive({
switch(input$param,
"Repsonse A" = datasetInput()$respondA,
"Response B" = datasetInput()$respondB)
})
factor <- reactive({
switch(input$factors,
"No grouping"=NULL,
"Block" = "replicate")
})
output$strip <- renderPlot({
if (input$fac == "factor1 on x-axis") {
p<-ggplot(datasetInput(), aes_string(x = factor1, y = params())) +
ylab("Mylabel1")+
xlab("Mylabel2")+
geom_jitter(position = position_jitter(width = .2),shape=19,size=5,aes_string(colour = factor()))+
labs(title = "Mytitle")+
theme_bw() +
theme(axis.line = element_line(colour = "black"),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
panel.border = element_blank(),
panel.background = element_blank())
print(p)
} else if(input$fac == "factor2 on x-axis") {
q<-ggplot(datasetInput(), aes_string(x = factor2, y = params())) +
ylab("Mylabel1")+
xlab("Mylabel2")+
geom_jitter(position = position_jitter(width = .2),shape=19,size=5,aes_string(colour = factor()))+
labs(title = "Mytitle")+
theme_bw() +
theme(axis.line = element_line(colour = "black"),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
panel.border = element_blank(),
panel.background = element_blank())
print(q)
}
})
})
shinyApp(ui=ui,server=server)
Ps: I want to use ggplot, since I can change the color of the data based on a factor very easy. For some factors I have >20 factor levels and it is not reaonable do to it with stripchart()
and add=T
Since your using aes_string for factor1 and factor2 they have to be string. This works for me:
library(shiny)
# Define UI for dataset viewer application
ui<-(fluidPage(
titlePanel("My project"),
sidebarLayout(
sidebarPanel(
selectInput("dataset", "Choose a dataset:",
choices = c("exp1","exp2", "exp3"),selected="exp1"),
selectInput(inputId = "param",choices = c("Repsonse A","Response B"),label = "Choose repsonse",selected="Repsonse A"),
selectInput("factors", "Choose grouping factor:",
choices = c("No grouping","Block"),selected="No grouping"),
radioButtons(inputId = "fac",choice=c("factor1 on x-axis","factor2 on x-axis"), "Choose type of x-axis")
),
mainPanel(
h3(textOutput("caption", container = span)),
plotOutput("strip")
)
)
))
library(shiny)
library(datasets)
library(ggplot2)
server<-(function(input, output,clientData, session) {
df<-data.frame("respondA"=runif(20, min=0, max=0.4),"respondB"=runif(20, min=0, max=0.4),"factor1"="A","factor2"="B","replicate"=as.factor(c(1:20)))
df2<-data.frame("respondA"=runif(20, min=0, max=0.4),"respondB"=runif(20, min=0, max=0.4),"factor1"="A","factor2"="B","replicate"=as.factor(c(1:20)))
df3<-data.frame("respondA"=runif(20, min=0, max=0.4),"respondB"=runif(20, min=0, max=0.4),"factor1"="A","factor2"="B","replicate"=as.factor(c(1:20)))
datasetInput <- reactive({
switch(input$dataset,
"exp1" = df,
"exp2" = df2,
"exp3" = df3)
})
params <- reactive({
switch(input$param,
"Repsonse A" = datasetInput()$respondA,
"Response B" = datasetInput()$respondB)
})
factor <- reactive({
switch(input$factors,
"No grouping"=NULL,
"Block" = "replicate")
})
output$strip <- renderPlot({
if (input$fac == "factor1 on x-axis") {
p<-ggplot(datasetInput(), aes_string(x = 'factor1', y = params())) +
ylab("Mylabel1")+
xlab("Mylabel2")+
geom_jitter(position = position_jitter(width = .2),shape=19,size=5,aes_string(colour = factor()))+
labs(title = "Mytitle")+
theme_bw() +
theme(axis.line = element_line(colour = "black"),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
panel.border = element_blank(),
panel.background = element_blank())
print(p)
} else if(input$fac == "factor2 on x-axis") {
q<-ggplot(datasetInput(), aes_string(x = 'factor2', y = params())) +
ylab("Mylabel1")+
xlab("Mylabel2")+
geom_jitter(position = position_jitter(width = .2),shape=19,size=5,aes_string(colour = factor()))+
labs(title = "Mytitle")+
theme_bw() +
theme(axis.line = element_line(colour = "black"),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
panel.border = element_blank(),
panel.background = element_blank())
print(q)
}
})
})
shinyApp(ui=ui,server=server)