I very recently began experimenting with FPGAs. In researching things around the net I've noticed in several places that designs might use multiple separate PLL clocks of the exact same speed. Why is that?
One example I will give is this site: Parallella Linux Quick Start
They have their FCLK_CLK1 and FCLK_CLK2 both at 200MHz. Why is this recommended and not a single clock at 200MHz for both? Is it just customary to give each major component their own clock even if it is the same? Or am I missing something?
There are many reasons to use multiple clocks of the exact same speed. So I will just state a few. However i don't have any deep knowledge of your example.
Like stated in the comments a FPGA is a highly complex device. Only the vendor knows exactly what is happening there, so they might give you some advice, which can be weird.
If you have a design, with just one clock source, it is critical to route the clock correctly. The clock has to trigger everywhere at the same time, which is hard to manage for the PnR tool. Today's FPGAs don't usually have this issue.
If you have different IPs/Designs, which you fuse on one FPGA, the IPs can use different clocks. If you want to split it later again, you will need multiple sources of the clock anyway. Besides, you are forced to implement some registers if you switch a clockdomain and during the merging of your IPs, you don't mix up evrything, which is a good design style. This also maybe the case of your example.
HDMI support is provided by an IP core from Analog Devices ...
Maybe the additional clock is only used as an output at some I/O Port.
In today's CMOS technology, the most power is wasted on transitions (transistor switches) and static power-leakage (the damn thing is so small, it just leaks current). With multiple clock domain, you have the opportunity to have less transitions per second. Or you can switch off parts of your device completly.