I have a list of data frames :
df
[[1]]
ID SignalIntensity SNR
1 109 6.182309 0.8453577
2 110 10.172777 4.3837078
3 111 7.292275 1.0725751
4 112 8.898467 2.3192185
5 113 9.591034 3.7133402
7 116 7.789323 1.3636656
8 117 7.194835 1.1349738
9 118 6.572773 0.9041846
11 120 9.371126 2.9968457
12 121 6.154944 0.7777584
[[2]]
ID SignalIntensity SNR
1 118 6.572773 0.9041846
2 119 5.377519 0.7098581
3 120 9.371126 2.9968457
4 121 6.154944 0.7777584
5 123 5.797446 0.7235425
6 124 5.573614 0.7019574
7 125 7.014537 0.3433343
8 126 6.089159 0.7971650
9 127 6.314820 0.7845944
10 131 5.342544 1.2300000
It has headers as ID
SignalIntensity
and SNR
. I check the headers by names(df[[1]]). Now after checking the headers i need to take the decision such as if headers of df[[1]]
are ID
,SingnalIntensity
and SNR
then do something like
If(names(df[[1]]=="ID"))
{
print("This is data from Illumina platform")
my code..........
}
else if{my code...........}
Here As You know it has three headers.
I know my way of doing is wrong like below trail
if(names(df[[1]]=="ID, SignalIntensity, SNR"))
, it give me
Error in if (names(df[[1]] == "ID, SignalIntensity, SNR")) { :
argument is of length zero
Which is quite obvious.
How to set if{}
so that it matches all the three headers or(header of our choice either 1 r 2 r 3) and go to other code if true
, otherwise do something else. Thanks
Expanding on my comments, try this:
#dummy data
df <-
list(
data.frame(ID=1:5,
SignalIntensity=runif(5),
SNR=runif(5)),
data.frame(ID=1:3,
x=runif(3)),
data.frame(ID=1:5,
SignalIntensity=runif(5),
SNR=runif(5)))
#check 1st data frame
if(length(intersect(names(df[[1]]),c("ID","SignalIntensity","SNR")))==3){
print("Illumina platform")} else {
print("Non Illumina platform")}
# [1] "Illumina platform"
#check all dataframes
lapply(df,function(i)
if(length(intersect(names(i),c("ID","SignalIntensity","SNR")))==3){
"Illumina platform"} else {
"Non Illumina platform"})
# [[1]]
# [1] "Illumina platform"
#
# [[2]]
# [1] "Non Illumina platform"
#
# [[3]]
# [1] "Illumina platform"