I have an odd situation, and please pardon me for not providing a reproducible example for this question. I have more than 1000 lines of syntax written for Stata to carry out multiple analyses (I wrote it before I started using R). This syntax is used to perform analysis in a quarterly dataset every 3 months to create a report. Results of the analyses are saved in csv files, and read via R, and put into a Word document using ReporterS package.
Is there any way to invoke Stata via R, and specify/pipe the syntax to run it? (I understand the reverse situation can be done using rsource (user-written command) in Stata). I can still manually fire up Stata and run the syntax there. But is it possible to do it via R? So, a shiny app/web interface can be created to do this part, and the user doesn't need to do it manually?
As @thelatemail suggests, the easiest thing to do here is simply run Stata in batch mode from a system call.
Here's an example do file (called "example.do"):
log using out.log, replace
sysuse auto
regress mpg weight foreign
And here's the R code to run it and retrieve the output (assuming Stata is on your path and you replace Stata-64 with the appropriate binary file on your machine):
> system("Stata-64 /e do example.do"); readLines("out.log")
[1] "-----------------------------------------------------------------------------------------------------------------------"
[2] " name: <unnamed>"
[3] " log: FilePathHere"
[4] " log type: text"
[5] " opened on: 9 Jan 2015, 13:34:18"
[6] ""
[7] ". sysuse auto"
[8] "(1978 Automobile Data)"
[9] ""
[10] ". regress mpg weight foreign"
[11] ""
[12] " Source | SS df MS Number of obs = 74"
[13] "-------------+------------------------------ F( 2, 71) = 69.75"
[14] " Model | 1619.2877 2 809.643849 Prob > F = 0.0000"
[15] " Residual | 824.171761 71 11.608053 R-squared = 0.6627"
[16] "-------------+------------------------------ Adj R-squared = 0.6532"
[17] " Total | 2443.45946 73 33.4720474 Root MSE = 3.4071"
[18] ""
[19] "------------------------------------------------------------------------------"
[20] " mpg | Coef. Std. Err. t P>|t| [95% Conf. Interval]"
[21] "-------------+----------------------------------------------------------------"
[22] " weight | -.0065879 .0006371 -10.34 0.000 -.0078583 -.0053175"
[23] " foreign | -1.650029 1.075994 -1.53 0.130 -3.7955 .4954422"
[24] " _cons | 41.6797 2.165547 19.25 0.000 37.36172 45.99768"
[25] "------------------------------------------------------------------------------"
[26] ""
[27] ". "
[28] "end of do-file"
[29] ""
[30] ". exit, clear"
It may be easier to parse the output if you log using Stata Markup Control Language (SMCL), by replacing the first line of the do file with log using out.log, replace smcl. Then the output will be:
[1] "{smcl}"
[2] "{com}{sf}{ul off}{txt}{.-}"
[3] " name: {res}<unnamed>"
[4] " {txt}log: {res}FilePathHere"
[5] " {txt}log type: {res}smcl"
[6] " {txt}opened on: {res} 9 Jan 2015, 13:41:53"
[7] "{txt}"
[8] "{com}. sysuse auto"
[9] "{txt}(1978 Automobile Data)"
[10] ""
[11] "{com}. regress mpg weight foreign"
[12] ""
[13] " {txt}Source {c |} SS df MS Number of obs ={res} 74"
[14] "{txt}{hline 13}{char +}{hline 30} F( 2, 71) ={res} 69.75"
[15] " {txt} Model {char |} {res} 1619.2877 2 809.643849 {txt}Prob > F = {res} 0.0000"
[16] " {txt}Residual {char |} {res} 824.171761 71 11.608053 {txt}R-squared = {res} 0.6627"
[17] "{txt}{hline 13}{char +}{hline 30} Adj R-squared = {res} 0.6532"
[18] " {txt} Total {char |} {res} 2443.45946 73 33.4720474 {txt}Root MSE = {res} 3.4071"
[19] ""
[20] "{txt}{hline 13}{c TT}{hline 11}{hline 11}{hline 9}{hline 8}{hline 13}{hline 12}"
[21] "{col 1} mpg{col 14}{c |} Coef.{col 26} Std. Err.{col 38} t{col 46} P>|t|{col 54} [95% Con{col 67}f. Interval]"
[22] "{hline 13}{c +}{hline 11}{hline 11}{hline 9}{hline 8}{hline 13}{hline 12}"
[23] "{space 6}weight {c |}{col 14}{res}{space 2}-.0065879{col 26}{space 2} .0006371{col 37}{space 1} -10.34{col 46}{space 3}0.000{col 54}{space 4}-.0078583{col 67}{space 3}-.0053175"
[24] "{txt}{space 5}foreign {c |}{col 14}{res}{space 2}-1.650029{col 26}{space 2} 1.075994{col 37}{space 1} -1.53{col 46}{space 3}0.130{col 54}{space 4} -3.7955{col 67}{space 3} .4954422"
[25] "{txt}{space 7}_cons {c |}{col 14}{res}{space 2} 41.6797{col 26}{space 2} 2.165547{col 37}{space 1} 19.25{col 46}{space 3}0.000{col 54}{space 4} 37.36172{col 67}{space 3} 45.99768"
[26] "{txt}{hline 13}{c BT}{hline 11}{hline 11}{hline 9}{hline 8}{hline 13}{hline 12}"
[27] "{res}{txt}"
[28] "{com}. "
[29] "{txt}end of do-file"