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image-processingimagej

Image Averaging and Saving output

I'm planning to process quite a large number of images and would like to average every 5 consecutive images. My images are saved as .dm4 file format.

Essentially, I want to produce a single averaged image output for each 5 images that I can save. So for instance, if I had 400 images, I would like to get 80 averaged images that would represent the 400 images.

I'm aware that there's the Running Z Projector plugin but it does a running average and doesn't give me the reduced number of images I'm looking for. Is this something that has already been done before?

Thanks for the help!

Solution

  • It looks like the Image>Stacks>Tools>Grouped Z_Projector does exactly you want.

    I found it by opening the command finder ('L') and filtering on "project".