I just recently updated to the newest build of MacOSX Yosemite (Yosemite Beta Version 3 - September 15th 2014 Update). R was working fine in Yosemite before this new update, but now I am getting this error when I run from the command line:
dyld: Library not loaded: /usr/local/opt/gcc/lib/gcc/x86_64-apple-darwin13.2.0/4.8.3/libgfortran.3.dylib
Referenced from: /usr/local/Cellar/r/3.1.1/R.framework/Versions/3.1/Resources/lib/libR.dylib
Reason: image not found
[1] 80010 trace trap R
It's a gfortran error I presume -- I've re-installed X-Code, gcc4.9 (etc.), and gfortran (I use homebrew to manage my packages and tried to compile from package too) to no avail.
I haven't noticed any other applications or programs that have stopped working.
Here's the real kicker for me: R from within R-Studio works like a charm.
This wouldn't be a big deal, but I use R from the command line in a couple of my data analysis pipelines.
Any ideas how to fix this error? Googling around has got me nowhere.
This isn't such a big deal to go back and install Mavericks -- I was running both for a while, but Yosemite doesn't have any large problems with the new beta updates. I can still use R via RStudio, just glibfortran is not talking to R in my terminal. I'm just concerned for scripts that call on R at the command line.
Doesn't appear to be a homebrew issue as when I compile gfortran from source I get the same error.
UPDATES:
This isn't such a big deal to go back and install Mavericks -- I was running both for a while, but Yosemite doesn't have any large problems with the new beta updates. I can still use R via RStudio, just glibfortran is not talking to R in my terminal. I'm just concerned for scripts that call on R at the command line.
Doesn't appear to be a homebrew issue as when I compile gfortran from source I get the same error.
FINAL UPDATE:
This error was fixed in the newest Yosemite Beta release Version 4 on September 30th 2014.