I have been attempting to install Cython 0.21 on Linux Mint 17. I have tried using pip:
sudo pip install Cython
and also downloading/unpacking Cython 0.21 and using python to compile/install using both:
python setup.py install
and
sudo python setup.py install
In each case, setup appears to go through the correct compilation sequence, however once it gets to what seems to be getting the current working directory (using os.getcwdu()) it results in
OSError: [Errno 34] Numerical result out of range (Full dump at end).
My current attempts to resolve have been:
Attribute Error: no model object named
'Distutils', when trying sudo pip install --upgrade cython from
v0.20) I'm out of ideas, and can't find what seems to be an overflow error that occurs during the very compilation of Cython. My thinking is that there's something odd about the temp file structure it's creating...in **setup_args. It looks like this temp structure is iteratively being added to one really long path (I don't know what all the Cython/temp files are for), which maybe then just gives up and says I quit when calling os.getcwdu()?
UPDATE: I have attempted to build w/ --no-cython-compile , which works, but the pure Python implementation isn't helpful here.
UPDATE2: I found the culprit. It appears that a package called setuptools-cython was sitting in the python system. Upon removal, all compiled fine. Something to watch for.
Bug report maybe?
Python version:
Python 2.7.6-8 (for Ubuntu Trusty/14.04)
Kernel version:
Linux 3.13.0-24-generic #47-Ubuntu SMP Fri May 2 23:30:00 UTC 2014
x86_64 x86_64 x86_64 GNU/Linux
GCC version:
gcc (Ubuntu 4.8.2-19ubuntu1) 4.8.2
Python setuptools version:
6.0.7
Installation dump w/ error using pip (same for each install):
==> sudo pip install cython
Downloading/unpacking cython
Downloading Cython-0.21.tar.gz (1.5MB): 1.5MB downloaded
Running setup.py (path:/tmp/pip_build_root/cython/setup.py) egg_info for package cython
Compiling module Cython.Plex.Scanners ...
Compiling module Cython.Plex.Actions ...
Compiling module Cython.Compiler.Lexicon ...
Compiling module Cython.Compiler.Scanning ...
Compiling module Cython.Compiler.Parsing ...
Compiling module Cython.Compiler.Visitor ...
Compiling module Cython.Compiler.FlowControl ...
Compiling module Cython.Compiler.Code ...
Compiling module Cython.Runtime.refnanny ...
Compiling module Cython.Tempita._tempita ...
<<(snipped, repetitious, goto first note of error)>>
ERROR: [Errno 34] Numerical result out of range
Extension module compilation failed, looks like Cython cannot run
properly on this system. To work around this, pass the option
"--no-cython-compile". This will install a pure Python version of
Cython without compiling its own sources.
<<(The traceback)>>
Traceback (most recent call last):
File "<string>", line 17, in <module>
File "/tmp/pip_build_root/cython/setup.py", line 337, in <module>
**setup_args
File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
_setup_distribution = dist = klass(attrs)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 266, in __init__
File "/usr/lib/python2.7/distutils/dist.py", line 287, in __init__
self.finalize_options()
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 300, in finalize_options
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 2183, in require
items = working_set.resolve(reqs, env, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 614, in resolve
dist = best[req.key] = env.best_match(req, ws, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 857, in best_match
return self.obtain(req, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 869, in obtain
return installer(requirement)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 338, in fetch_build_egg
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 613, in easy_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 643, in install_item
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 833, in install_eggs
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1055, in build_and_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1040, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 68, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 114, in run
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 67, in runner
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 43, in _execfile
File "/tmp/easy_install-oM3TIi/Cython-0.21/setup.py", line 337, in <module>
**setup_args
File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
_setup_distribution = dist = klass(attrs)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 266, in __init__
File "/usr/lib/python2.7/distutils/dist.py", line 287, in __init__
self.finalize_options()
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 300, in finalize_options
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 2183, in require
items = working_set.resolve(reqs, env, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 614, in resolve
dist = best[req.key] = env.best_match(req, ws, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 857, in best_match
return self.obtain(req, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 869, in obtain
return installer(requirement)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 338, in fetch_build_egg
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 613, in easy_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 643, in install_item
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 833, in install_eggs
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1055, in build_and_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1040, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 68, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 114, in run
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 67, in runner
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 43, in _execfile
File "/tmp/easy_install-oM3TIi/Cython-0.21/temp/easy_install-UA0lQE/Cython-0.21/setup.py", line 337, in <module>
**setup_args
File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
_setup_distribution = dist = klass(attrs)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 266, in __init__
File "/usr/lib/python2.7/distutils/dist.py", line 287, in __init__
self.finalize_options()
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 300, in finalize_options
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 2183, in require
items = working_set.resolve(reqs, env, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 614, in resolve
dist = best[req.key] = env.best_match(req, ws, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 857, in best_match
return self.obtain(req, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 869, in obtain
return installer(requirement)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 338, in fetch_build_egg
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 613, in easy_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 643, in install_item
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 833, in install_eggs
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1055, in build_and_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1040, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 68, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 114, in run
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 67, in runner
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 43, in _execfile
<<(snipped - repetitious)>>
File "/tmp/easy_install-oM3TIi/Cython-0.21/temp/easy_install-UA0lQE/Cython-0.21/temp/easy_install-8qfQMc/Cython-0.21/temp/easy_install-Qc_qzI/Cython-0.21/temp/easy_install-eb8bK_/Cython-0.21/temp/easy_install-BR3a7l/Cython-0.21/temp/easy_install-tA_dfC/Cython-0.21/temp/easy_install-SFBomd/Cython-0.21/temp/easy_install-4T8n8i/Cython-0.21/temp/easy_install-Gf2wwr/Cython-0.21/temp/easy_install-w4dZCL/Cython-0.21/temp/easy_install-03hPx9/Cython-0.21/temp/easy_install-SUfUfS/Cython-0.21/setup.py", line 337, in <module>
**setup_args
File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
_setup_distribution = dist = klass(attrs)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 266, in __init__
File "/usr/lib/python2.7/distutils/dist.py", line 287, in __init__
self.finalize_options()
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 300, in finalize_options
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 2183, in require
items = working_set.resolve(reqs, env, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 614, in resolve
dist = best[req.key] = env.best_match(req, ws, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 857, in best_match
return self.obtain(req, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 869, in obtain
return installer(requirement)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 338, in fetch_build_egg
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 613, in easy_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 643, in install_item
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 833, in install_eggs
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1055, in build_and_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1040, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 68, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 114, in run
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 67, in runner
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 43, in _execfile
File "/tmp/easy_install-oM3TIi/Cython-0.21/temp/easy_install-UA0lQE/Cython-0.21/temp/easy_install-8qfQMc/Cython-0.21/temp/easy_install-Qc_qzI/Cython-0.21/temp/easy_install-eb8bK_/Cython-0.21/temp/easy_install-BR3a7l/Cython-0.21/temp/easy_install-tA_dfC/Cython-0.21/temp/easy_install-SFBomd/Cython-0.21/temp/easy_install-4T8n8i/Cython-0.21/temp/easy_install-Gf2wwr/Cython-0.21/temp/easy_install-w4dZCL/Cython-0.21/temp/easy_install-03hPx9/Cython-0.21/temp/easy_install-SUfUfS/Cython-0.21/temp/easy_install-e", line 337, in <module>
**setup_args
File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
_setup_distribution = dist = klass(attrs)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 266, in __init__
File "/usr/lib/python2.7/distutils/dist.py", line 287, in __init__
self.finalize_options()
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 300, in finalize_options
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 2183, in require
items = working_set.resolve(reqs, env, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 614, in resolve
dist = best[req.key] = env.best_match(req, ws, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 857, in best_match
return self.obtain(req, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 869, in obtain
return installer(requirement)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 338, in fetch_build_egg
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 613, in easy_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 643, in install_item
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 833, in install_eggs
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1055, in build_and_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1040, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 68, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 114, in run
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 67, in runner
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 43, in _execfile
File "/tmp/easy_install-oM3TIi/Cython-0.21/temp/easy_install-UA0lQE/Cython-0.21/temp/easy_install-8qfQMc/Cython-0.21/temp/easy_install-Qc_qzI/Cython-0.21/temp/easy_install-eb8bK_/Cython-0.21/temp/easy_install-BR3a7l/Cython-0.21/temp/easy_install-tA_dfC/Cython-0.21/temp/easy_install-SFBomd/Cython-0.21/temp/easy_install-4T8n8i/Cython-0.21/temp/easy_install-Gf2wwr/Cython-0.21/temp/easy_install-w4dZCL/Cython-0.21/temp/easy_install-03hPx9/Cython-0.21/temp/easy_install-SUfUfS/Cython-0.21/temp/easy_install-e", line 337, in <module>
**setup_args
File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
_setup_distribution = dist = klass(attrs)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 266, in __init__
File "/usr/lib/python2.7/distutils/dist.py", line 287, in __init__
self.finalize_options()
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 300, in finalize_options
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 2183, in require
items = working_set.resolve(reqs, env, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 614, in resolve
dist = best[req.key] = env.best_match(req, ws, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 857, in best_match
return self.obtain(req, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 869, in obtain
return installer(requirement)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 338, in fetch_build_egg
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 613, in easy_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 643, in install_item
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 833, in install_eggs
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1055, in build_and_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1040, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 68, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 114, in run
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 67, in runner
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 43, in _execfile
File "/tmp/easy_install-oM3TIi/Cython-0.21/temp/easy_install-UA0lQE/Cython-0.21/temp/easy_install-8qfQMc/Cython-0.21/temp/easy_install-Qc_qzI/Cython-0.21/temp/easy_install-eb8bK_/Cython-0.21/temp/easy_install-BR3a7l/Cython-0.21/temp/easy_install-tA_dfC/Cython-0.21/temp/easy_install-SFBomd/Cython-0.21/temp/easy_install-4T8n8i/Cython-0.21/temp/easy_install-Gf2wwr/Cython-0.21/temp/easy_install-w4dZCL/Cython-0.21/temp/easy_install-03hPx9/Cython-0.21/temp/easy_install-SUfUfS/Cython-0.21/temp/easy_install-e", line 337, in <module>
**setup_args
File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
_setup_distribution = dist = klass(attrs)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 266, in __init__
File "/usr/lib/python2.7/distutils/dist.py", line 287, in __init__
self.finalize_options()
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 300, in finalize_options
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 2183, in require
items = working_set.resolve(reqs, env, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 614, in resolve
dist = best[req.key] = env.best_match(req, ws, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 857, in best_match
return self.obtain(req, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 869, in obtain
return installer(requirement)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 338, in fetch_build_egg
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 613, in easy_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 643, in install_item
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 833, in install_eggs
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1055, in build_and_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1040, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 68, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 114, in run
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 67, in runner
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 43, in _execfile
File "/tmp/easy_install-oM3TIi/Cython-0.21/temp/easy_install-UA0lQE/Cython-0.21/temp/easy_install-8qfQMc/Cython-0.21/temp/easy_install-Qc_qzI/Cython-0.21/temp/easy_install-eb8bK_/Cython-0.21/temp/easy_install-BR3a7l/Cython-0.21/temp/easy_install-tA_dfC/Cython-0.21/temp/easy_install-SFBomd/Cython-0.21/temp/easy_install-4T8n8i/Cython-0.21/temp/easy_install-Gf2wwr/Cython-0.21/temp/easy_install-w4dZCL/Cython-0.21/temp/easy_install-03hPx9/Cython-0.21/temp/easy_install-SUfUfS/Cython-0.21/temp/easy_install-e", line 337, in <module>
**setup_args
File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
_setup_distribution = dist = klass(attrs)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 266, in __init__
File "/usr/lib/python2.7/distutils/dist.py", line 287, in __init__
self.finalize_options()
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 300, in finalize_options
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 2183, in require
items = working_set.resolve(reqs, env, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 614, in resolve
dist = best[req.key] = env.best_match(req, ws, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 857, in best_match
return self.obtain(req, installer)
File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 869, in obtain
return installer(requirement)
File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 338, in fetch_build_egg
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 613, in easy_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 643, in install_item
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 833, in install_eggs
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1055, in build_and_install
File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 1040, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 68, in run_setup
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 114, in run
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 67, in runner
File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 43, in _execfile
<<(This Madness continues for awhile...snip to end game)>>
File "/tmp/easy_install-oM3TIi/Cython-0.21/temp/easy_install-UA0lQE/Cython-0.21/temp/easy_install-8qfQMc/Cython-0.21/temp/easy_install-Qc_qzI/Cython-0.21/temp/easy_install-eb8bK_/Cython-0.21/temp/easy_install-BR3a7l/Cython-0.21/temp/easy_install-tA_dfC/Cython-0.21/temp/easy_install-SFBomd/Cython-0.21/temp/easy_install-4T8n8i/Cython-0.21/temp/easy_install-Gf2wwr/Cython-0.21/temp/easy_install-w4dZCL/Cython-0.21/temp/easy_install-03hPx9/Cython-0.21/temp/easy_install-SUfUfS/Cython-0.21/temp/easy_install-e", line 266, in <module>
compile_cython_modules(cython_profile, cython_compile_more, cython_with_refnanny)
File "/tmp/easy_install-oM3TIi/Cython-0.21/temp/easy_install-UA0lQE/Cython-0.21/temp/easy_install-8qfQMc/Cython-0.21/temp/easy_install-Qc_qzI/Cython-0.21/temp/easy_install-eb8bK_/Cython-0.21/temp/easy_install-BR3a7l/Cython-0.21/temp/easy_install-tA_dfC/Cython-0.21/temp/easy_install-SFBomd/Cython-0.21/temp/easy_install-4T8n8i/Cython-0.21/temp/easy_install-Gf2wwr/Cython-0.21/temp/easy_install-w4dZCL/Cython-0.21/temp/easy_install-03hPx9/Cython-0.21/temp/easy_install-SUfUfS/Cython-0.21/temp/easy_install-e", line 210, in compile_cython_modules
result = compile(pyx_source_file)
File "Cython/Compiler/Main.py", line 622, in compile
return compile_single(source, options, full_module_name)
File "Cython/Compiler/Main.py", line 575, in compile_single
return run_pipeline(source, options, full_module_name)
File "Cython/Compiler/Main.py", line 439, in run_pipeline
err, enddata = Pipeline.run_pipeline(pipeline, source)
File "Cython/Compiler/Pipeline.py", line 328, in run_pipeline
data = phase(data)
File "Cython/Compiler/Pipeline.py", line 54, in generate_pyx_code_stage
module_node.process_implementation(options, result)
File "Cython/Compiler/ModuleNode.py", line 111, in process_implementation
self.generate_c_code(env, options, result)
File "Cython/Compiler/ModuleNode.py", line 328, in generate_c_code
self.body.generate_function_definitions(env, code)
File "Cython/Compiler/Nodes.py", line 398, in generate_function_definitions
stat.generate_function_definitions(env, code)
File "Cython/Compiler/Nodes.py", line 398, in generate_function_definitions
stat.generate_function_definitions(env, code)
File "Cython/Compiler/Nodes.py", line 4492, in generate_function_definitions
self.body.generate_function_definitions(self.scope, code)
File "Cython/Compiler/Nodes.py", line 398, in generate_function_definitions
stat.generate_function_definitions(env, code)
File "Cython/Compiler/Nodes.py", line 4525, in generate_function_definitions
self.body.generate_function_definitions(env, code)
File "Cython/Compiler/Nodes.py", line 398, in generate_function_definitions
stat.generate_function_definitions(env, code)
File "Cython/Compiler/Nodes.py", line 2975, in generate_function_definitions
self.py_wrapper.generate_function_definitions(env, code)
File "Cython/Compiler/Nodes.py", line 3115, in generate_function_definitions
code.mark_pos(self.pos)
File "Cython/Compiler/Code.py", line 1665, in mark_pos
source_desc.get_escaped_description(), line, u'\n'.join(lines))
File "Cython/Compiler/Scanning.py", line 145, in get_escaped_description
self.get_description().encode('ASCII', 'replace').decode("ASCII")
File "Cython/Compiler/Scanning.py", line 214, in get_description
return os.path.relpath(self.path_description)
File "/usr/lib/python2.7/posixpath.py", line 438, in relpath
path_list = [x for x in abspath(path).split(sep) if x]
File "/usr/lib/python2.7/posixpath.py", line 369, in abspath
cwd = os.getcwdu()
OSError: [Errno 34] Numerical result out of range
It appears that a sneaky little package called setuptools-cython was sitting in the python system. Upon removal, all built fine. Something to watch for.
pip uninstall setuptools-cython was my solution to this.