Submitting an SGE job to PBS/Torque

Question

Hi I am setting up a software pipeline (an extensive bioinformatic annotation tool) that was originally written to submit SGE jobs but I am on a PBS/Torque cluster. Any ideas about a way to convert these scripts from SGE to PBS? Or a piece of software available that can submit SGE jobs to PBS?

Thanks, Marcus

Answer 1

A search on the web found:

http://wiki.ibest.uidaho.edu/help/Tutorials/SGE_PBS_Converting.html

Creating a script that does replacement using the table from the above link would be simple, if not somewhat tedious.