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rplotprobability-densitydensity-plotstacked-chart

Overlapping stacked density plots


I'm trying to achieve a similar plot to this one, using R's native plot command.

enter image description here

I was able to get something similar with the code below, however, I'd like the density polygons to overlap. Can anyone suggest a way to do this?

data = lapply(1:5, function(x) density(rnorm(100, mean = x)))

par(mfrow=c(5,1))
for(i in 1:length(data)){
  plot(data[[i]], xaxt='n', yaxt='n', main='', xlim=c(-2, 8), xlab='', ylab='', bty='n', lwd=1)
  polygon(data[[i]], col=rgb(0,0,0,.4), border=NA)
  abline(h=0, lwd=0.5)
}

Outputs:

enter image description here


Solution

  • I would do it something like the following. I plot the densities in the same plot but add an integer to the y values. To make them overlapping i multiply by a constant factor fac.

    # Create your toy data
    data <- lapply(1:5, function(x) density(rnorm(100, mean = x)))
    
    fac <- 5  # A factor to make the densities overlap
    
    # We make a empty plot
    plot(1, type = "n", xlim = c(-3, 10), ylim = c(1, length(data) + 2),
         axes = FALSE, xlab = "", ylab = "")  
    
    # Add each density, shifted by i and scaled by fac
    for(i in 1:length(data)){
      lines(  data[[i]]$x, fac*data[[i]]$y + i)
      polygon(data[[i]]$x, fac*data[[i]]$y + i, col = rgb(0, 0, 0, 0.4), border = NA)
      abline(h = i, lwd = 0.5)
    }
    

    Output