I am having issues running the Neo4j on my system. Currently I am running it on a Windows machine with Windows 8. It was working great for me, however now when I run the Neo4j.bat in the bin folder it appears to timeout. Below is the error in the logs, I only posted the end of the log because I reached the limit on the post. I did check the setting it refers to and it is already set to true, however I'm not sure what this setting does.
Also I am not entirely clear on the best way to shutdown the server once it is running in this mode. Currently I have been using Ctrl+c on the java process that runs, however I don't think this is correct. What is the best way to do this?
I should mention that I am only really using this server as a development environment. I am setting up my production database on a linux server that is running okay as of now.
2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: System.properties: 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: sun.boot.library.path = C:\Program Files\Java\jdk1.7.0_45\jre\bin 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: org.neo4j.server.properties = conf/neo4j-server.properties 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: path.separator = ; 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: file.encoding.pkg = sun.io 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: user.country = CA 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: user.script = 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: sun.java.launcher = SUN_STANDARD 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: sun.os.patch.level = 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: user.dir = C:\Users\Phil\Desktop\NEO4J-~1.3 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: user.variant = 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: log4j.configuration = file:conf/log4j.properties 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: sun.jnu.encoding = Cp1252 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: sun.management.compiler = HotSpot 64-Bit Tiered Compilers 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: user.home = C:\Users\Phil 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: user.timezone = America/New_York 2014-06-27 19:57:34.679+0000 INFO [o.n.k.i.DiagnosticsManager]: file.encoding = Cp1252 2014-06-27 19:57:34.680+0000 INFO [o.n.k.i.DiagnosticsManager]: user.name = Phil 2014-06-27 19:57:34.680+0000 INFO [o.n.k.i.DiagnosticsManager]: sun.java.command = org.neo4j.server.Bootstrapper 2014-06-27 19:57:34.680+0000 INFO [o.n.k.i.DiagnosticsManager]: sun.arch.data.model = 64 2014-06-27 19:57:34.680+0000 INFO [o.n.k.i.DiagnosticsManager]: user.language = en 2014-06-27 19:57:34.680+0000 INFO [o.n.k.i.DiagnosticsManager]: awt.toolkit = sun.awt.windows.WToolkit 2014-06-27 19:57:34.680+0000 INFO [o.n.k.i.DiagnosticsManager]: file.separator = \ 2014-06-27 19:57:34.680+0000 INFO [o.n.k.i.DiagnosticsManager]: sun.io.unicode.encoding = UnicodeLittle 2014-06-27 19:57:34.680+0000 INFO [o.n.k.i.DiagnosticsManager]: sun.cpu.endian = little 2014-06-27 19:57:34.680+0000 INFO [o.n.k.i.DiagnosticsManager]: sun.desktop = windows 2014-06-27 19:57:34.680+0000 INFO [o.n.k.i.DiagnosticsManager]: sun.cpu.isalist = amd64 2014-06-27 19:57:34.680+0000 INFO [o.n.k.i.DiagnosticsManager]: Network information: 2014-06-27 19:57:34.740+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Software Loopback Interface 1: 2014-06-27 19:57:34.741+0000 INFO [o.n.k.i.DiagnosticsManager]:
address: 127.0.0.1 2014-06-27 19:57:34.741+0000 INFO [o.n.k.i.DiagnosticsManager]: address: 0:0:0:0:0:0:0:1 2014-06-27 19:57:34.741+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Microsoft Kernel Debug Network Adapter: 2014-06-27 19:57:34.741+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Intel(R) Dual Band Wireless-N 7260: 2014-06-27 19:57:34.741+0000 INFO [o.n.k.i.DiagnosticsManager]: address: 192.168.7.3 2014-06-27 19:57:34.741+0000 INFO [o.n.k.i.DiagnosticsManager]: address: fe80:0:0:0:e0c1:1110:ab0d:e5cd%3 2014-06-27 19:57:34.741+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Teredo Tunneling Pseudo-Interface: 2014-06-27 19:57:34.741+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Microsoft Wi-Fi Direct Virtual Adapter: 2014-06-27 19:57:34.741+0000 INFO [o.n.k.i.DiagnosticsManager]: address: fe80:0:0:0:b59e:733f:c692:3e78%5 2014-06-27 19:57:34.742+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Microsoft Wi-Fi Direct Virtual Adapter #2: 2014-06-27 19:57:34.742+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Bluetooth Device (Personal Area Network): 2014-06-27 19:57:34.742+0000 INFO [o.n.k.i.DiagnosticsManager]: address: fe80:0:0:0:e133:a93a:40ff:bce6%7 2014-06-27 19:57:34.742+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Bluetooth Device (RFCOMM Protocol TDI): 2014-06-27 19:57:34.742+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Microsoft ISATAP Adapter #4: 2014-06-27 19:57:34.742+0000 INFO [o.n.k.i.DiagnosticsManager]:
address: fe80:0:0:0:0:5efe:c0a8:3801%9 2014-06-27 19:57:34.742+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Intel(R) Dual Band Wireless-N 7260 - VirtualBox Bridged Networking Driver Miniport: 2014-06-27 19:57:34.742+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface VirtualBox Host-Only Ethernet Adapter: 2014-06-27 19:57:34.742+0000 INFO [o.n.k.i.DiagnosticsManager]: address: 192.168.56.1 2014-06-27 19:57:34.742+0000 INFO [o.n.k.i.DiagnosticsManager]: address: fe80:0:0:0:e570:3571:e120:df83%11 2014-06-27 19:57:34.743+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Microsoft ISATAP Adapter #3: 2014-06-27 19:57:34.743+0000 INFO [o.n.k.i.DiagnosticsManager]:
address: fe80:0:0:0:0:5efe:c0a8:703%12 2014-06-27 19:57:34.743+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Microsoft ISATAP Adapter7: 2014-06-27 19:57:34.743+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Microsoft ISATAP Adapter: 2014-06-27 19:57:34.743+0000 INFO
[o.n.k.i.DiagnosticsManager]: Interface Microsoft ISATAP Adapter #2: 2014-06-27 19:57:34.743+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Microsoft ISATAP Adapter #5: 2014-06-27 19:57:34.743+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface VirtualBox Host-Only Ethernet Adapter-WFP Native MAC Layer LightWeight Filter-0000: 2014-06-27 19:57:34.743+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface VirtualBox Host-Only Ethernet Adapter-QoS Packet Scheduler-0000: 2014-06-27 19:57:34.743+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface VirtualBox Host-Only Ethernet Adapter-WFP 802.3 MAC Layer LightWeight Filter-0000: 2014-06-27 19:57:34.743+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Intel(R) Dual Band Wireless-N 7260-WFP Native MAC Layer LightWeight Filter-0000: 2014-06-27 19:57:34.744+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Intel(R) Dual Band Wireless-N 7260-Virtual WiFi Filter Driver-0000: 2014-06-27 19:57:34.744+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Intel(R) Dual Band Wireless-N 7260-Native WiFi Filter Driver-0000: 2014-06-27 19:57:34.744+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Intel(R) Dual Band Wireless-N 7260 - VirtualBox Bridged Networking Driver Miniport-QoS Packet Scheduler-0000: 2014-06-27 19:57:34.744+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Intel(R) Dual Band Wireless-N 7260 - VirtualBox Bridged Networking Driver Miniport-WFP 802.3 MAC Layer LightWeight Filter-0000: 2014-06-27 19:57:34.744+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Microsoft Wi-Fi Direct Virtual Adapter-WFP Native MAC Layer LightWeight Filter-0000: 2014-06-27 19:57:34.744+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Microsoft Wi-Fi Direct Virtual Adapter-Native WiFi Filter Driver-0000: 2014-06-27 19:57:34.744+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Microsoft Wi-Fi Direct Virtual Adapter-QoS Packet Scheduler-0000: 2014-06-27 19:57:34.744+0000 INFO [o.n.k.i.DiagnosticsManager]: Interface Microsoft Wi-Fi Direct Virtual Adapter-WFP 802.3 MAC Layer LightWeight Filter-0000: 2014-06-27 19:57:34.744+0000 INFO [o.n.k.i.DiagnosticsManager]: --- INITIALIZED diagnostics END --- 2014-06-27 19:57:34.881+0000 INFO [o.n.k.i.DiagnosticsManager]: --- STOPPING diagnostics START --- 2014-06-27 19:57:34.881+0000 INFO [o.n.k.i.DiagnosticsManager]: --- STOPPING diagnostics END --- 2014-06-27 19:57:34.882+0000 ERROR [o.n.k.EmbeddedGraphDatabase]: Startup failed: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager@3aefb8cf' was successfully initialized, but failed to start. Please see attached cause exception.: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource@5a232b4c' was successfully initialized, but failed to start. Please see attached cause exception.: Failed to start Neo4j with an older data store version. To enable automatic upgrade, please set configuration parameter "allow_store_upgrade=true" 2014-06-27 19:57:34.882+0000 INFO [o.n.k.EmbeddedGraphDatabase]: Shutdown started
The Gephi Neo4j Plugin was updated to 2.1.2 and so it will update your store when it opens it.
So either use Gephi only on a copy of your store, or also upgrade your sever to 2.1.2