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pythonnumpymasking

Remove columns where every value is masked


I want to remove columns from a masked array where every value in the column is masked. So in the following example:

>>> import numpy as np
>>> test = np.array([[1,0,0],[0,3,0],[1,4,0]])
>>> test = np.ma.masked_equal(test,0)
>>> test
[[1 -- --]
[-- 3  --]
[1  4  --]],
>>> np.somefunction(test)
[[1  --]
 [-- 3 ]
 [1  4 ]]

what should np.somefunction() be to get the given output?


Solution

  • You can use fancy indexing:

    test[:, ~np.all(test.mask, axis=0)]
    #masked_array(data =
    # [[1 --]
    # [-- 3]
    # [1 4]],
    #             mask =
    # [[False  True]
    # [ True False]
    # [False False]],
    #       fill_value = 0)