Currently I use gnome-shell and put all windows I do not need right now on the second workspace. Two screens are attached to the computer.
For some reason the windows float back from the second to the first workspace after a while. I believe that they come back if the main desktop is empty (first screen, first workspace is empty).
Thanks in advance.
sudo apt-get install gnome-tweak-tool
And in shell disable the "Dynamic Workspaces".
Thanks to Lukas Knuth!