Mapreduce Hadoop job exception Output directory already exists

I'm running a mapreduce job with the following run code and it keeps giving me the following exception. I made sure that I remove the folder before starting the job but it doesn't work.

The code:

    JobConf jobConf = new JobConf( getConf(), MPTU.class );
    jobConf.setJobName( "MPTU" );

    AvroJob.setMapperClass( jobConf, MPTUMapper.class );
    AvroJob.setReducerClass( jobConf, MPTUReducer.class );

    long milliSeconds = 1000 * 60 * 60;
    jobConf.setLong( "mapred.task.timeout", milliSeconds );

    Job job = new Job( jobConf );
    job.setJarByClass( MPTU.class );

    String paths = args[0] + "," + args[1];
    FileInputFormat.setInputPaths( job, paths );
    Path outputDir = new Path( args[2] );
    outputDir.getFileSystem( jobConf ).delete( outputDir, true );
    FileOutputFormat.setOutputPath( job, outputDir );

    AvroJob.setInputSchema( jobConf, Pair.getPairSchema( Schema.create( Type.LONG ), Schema.create( Type.STRING ) ) );
    AvroJob.setMapOutputSchema( jobConf, Pair.getPairSchema( Schema.create( Type.STRING ),
                                                             Schema.create( Type.STRING ) ) );
    AvroJob.setOutputSchema( jobConf,
                             Pair.getPairSchema( Schema.create( Type.STRING ), Schema.create( Type.STRING ) ) );

    job.setNumReduceTasks( 400 );
    job.submit();
    JobClient.runJob( jobConf );

The Exception:

13:31:39,268 ERROR UserGroupInformation:1335 - PriviledgedActionException as:msadri (auth:SIMPLE) cause:org.apache.hadoop.mapred.FileAlreadyExistsException: Output directory file:/Users/msadri/Documents/files/linkage_output already exists
Exception in thread "main" org.apache.hadoop.mapred.FileAlreadyExistsException: Output directory file:/Users/msadri/Documents/files/linkage_output already exists
    at org.apache.hadoop.mapred.FileOutputFormat.checkOutputSpecs(FileOutputFormat.java:117)
    at org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:937)
    at org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:896)
    at java.security.AccessController.doPrivileged(Native Method)
    at javax.security.auth.Subject.doAs(Subject.java:396)
    at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1332)
    at org.apache.hadoop.mapred.JobClient.submitJobInternal(JobClient.java:896)
    at org.apache.hadoop.mapred.JobClient.submitJob(JobClient.java:870)
    at org.apache.hadoop.mapred.JobClient.runJob(JobClient.java:1319)
    at com.reunify.socialmedia.RecordLinkage.MatchProfileTwitterUserHandler.run(MatchProfileTwitterUserHandler.java:58)
    at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70)
    at com.reunify.socialmedia.RecordLinkage.MatchProfileTwitterUserHandler.main(MatchProfileTwitterUserHandler.java:81)

Solution

Correct me if my understanding is wrong.. In the above code, you are referring to "/Users/msadri/Documents/.....", in local file system isn't it.? it seems like fs.defaultFS in core-site.xml is pointing to file:/// instead of hdfs address for your cluster.

1) If you needed to point to Local file system as per your requirement, then try this.

FileSystem.getLocal(conf).delete(outputDir, true);

2) If it is expected to point hdfs then Please check core-site.xml and in that, fs.defaultFS has to point to hdfs://<nameNode>:<port>/ then try it once.. (Error message saying that you are pointing to local file system. if it is pointing to hdfs, it would say "Output directory hdfs://<nameNode>:<port>/Users/msadri/... already exists"

Rule this out if its not necessary. Please let me know your response..