I just started using PhpStorm and WebStorm and I am working on the same directory with both. The problem is that each time I switch between windows, I am prompted for reloading the project because workspace.xml changes. I really don't have any clue how to get over this. Did anyone had the same issue? What should I do?
You should not use both WebStorm and PhpStorm at the same time on the same system and project. Note that PhpStorm already includes all the WebStorm features, so you don't need WebStorm if you have PhpStorm.