I am tunning my GEMM code and comparing with Eigen and MKL. I have a system with four physical cores. Until now I have used the default number of threads from OpenMP (eight on my system). I assumed this would be at least as good as four threads. However, I discovered today that if I run Eigen and my own GEMM code on a large dense matrix (1000x1000) I get better performance using four threads instead of eight. The efficiency jumped from 45% to 65%. I think this can be also seen in this plot https://plafrim.bordeaux.inria.fr/doku.php?id=people:guenneba
The difference is quite substantial. However, the performance is much less stable. The performance jumps around quit a bit each iteration both with Eigen and my own GEMM code. I'm surprised that Hyperthreading makes the performance so much worse. I guess this is not not a question. It's an unexpected observation which I'm hoping to find feedback on.
I see that not using hyper threading is also suggested here.
How to speed up Eigen library's matrix product?
I do have a question regarding measuring max performance. What I do now is run CPUz and look at the frequency as I'm running my GEMM code and then use that number in my code (4.3 GHz on one overclocked system I use). Can I trust this number for all threads? How do I know the frequency per thread to determine the maximum? How to I properly account for turbo boost?
The purpose of hyperthreading is to improve CPU usage for code exhibiting high latency. Hyperthreading masks this latency by treating two threads at once thus having more instruction level parallelism.
However, a well written matrix product kernel exhibits an excellent instruction level parallelism and thus exploits nearly 100% of the CPU ressources. Therefore there is no room for a second "hyper" thread, and the overhead of its management can only decrease the overall performance.