I was reading about cross database joins in Doctrine on their blog: http://www.doctrine-project.org/blog/cross-database-joins.html
The problem is that whenever table name contains a dot (used to specify the database), doctrine:schema:update
outputs Nothing to update - your database is already in sync with the current entity metadata.
The command basically just ignores entities whose table name contains a dot.
This is normal and it is a limitation of the ORM/DBAL.
The Doctrine\ORM\Tools\SchemaTool
uses a schema manager retrieved from your current connection.
The Doctrine\DBAL\Schema\AbstractSchemaManager
reads the tables from the current connection's db, and not from all databases.
Therefore, you have to manually handle tables placed in different DBs, or use your own schema manager with your own listTables
implementation.