Ubuntu 12.10 x64, R 2.15.2
I'm at a loss, I've installed R numerous times and never had the slightest problem with the install. This time however when I launch the program (either by using the GUI or by typing "R" in the terminal) I get this;
cannot find system Renviron Error : .onLoad failed in loadNamespace() for 'utils', details: call: options(op.utils[toset]) error: invalid value for 'editor'
R version 2.15.2 (2012-10-26) -- "Trick or Treat" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-linux-gnu (64-bit)
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Error : .onLoad failed in loadNamespace() for 'utils', details:
call: options(op.utils[toset]) error: invalid value for 'editor' In addition: Warning message: package "methods" in options("defaultPackages") was not found Error : .onLoad failed in loadNamespace() for 'utils', details: call: options(op.utils[toset]) error: invalid value for 'editor' In addition: Warning message: package ‘utils’ in options("defaultPackages") was not found Error : .onLoad failed in loadNamespace() for 'utils', details: call: options(op.utils[toset]) error: invalid value for 'editor' In addition: Warning message: package ‘stats’ in options("defaultPackages") was not found During startup - Warning message: package ‘methods’ in options("defaultPackages") was not found
Nothing works, no packages are found. I've never received any training on how to use Ubuntu, but from what I can gather I am missing the recommended packages for R.
I've tried completely removing R using both the Terminal as well as Synaptics Package Manager, then re-downloading the from CRAN servers (it seems to download too fast for my internet connection) and then reinstall. Same message. I'm at a loss.
I had the same problem and setting the EDITOR environment variable solved the problem for me.
Try e.g.
EDITOR=vim R
If that works, put the line
export EDITOR=vim
at the end of your ~/.profile
EDIT: the root of the problem was that /etc/R/Renviron was not read by R. As Dirk commented on his reply,
sudo chmod 644 /etc/R/Renviron
solves the problem