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rmatrixslicediagonal

Extracting off-diagonal slice of large matrix


I've got a large nxn matrix and would like to take off-diagonal slices of varying sizes. For example:

1 2 3 4 5 6
1 2 3 4 5 6
1 2 3 4 5 6
1 2 3 4 5 6
1 2 3 4 5 6
1 2 3 4 5 6

I'd like an R function which, when given the matrix and "width of diagonal slice" would return an nxn matrix of just those values. So for the matrix above and, say, 3, I'd get:

1 x x x x x
1 2 x x x x
1 2 3 x x x
x 2 3 4 x x
x x 3 4 5 x
x x x 4 5 6

At the moment I'm using (forgive me) a for loop which is incredibly slow:

getDiags<-function(ndiags, cormat){
  resmat=matrix(ncol=ncol(cormat),nrow=nrow(cormat))
  dimnames(resmat)<-dimnames(cormat)
  for(j in 1:ndiags){
    resmat[row(resmat) == col(resmat) + j] <- 
      cormat[row(cormat) == col(cormat) + j]
  }
  return(resmat)
}

I realise that this is a very "un-R" way to go about solving this problem. Is there a better way to do it, probably using diag or lower.tri?


Solution

  • size <- 6
    mat <- matrix(seq_len(size ^ 2), ncol = size)
    
    
    low <- 0
    high <- 3
    
    delta <- rep(seq_len(ncol(mat)), nrow(mat)) - 
        rep(seq_len(nrow(mat)), each = ncol(mat))
    #or Ben Bolker's better alternative
    delta <- row(mat) - col(mat)
    mat[delta < low | delta > high] <- NA
    mat
    

    this works with 5000 x 5000 matrices on my machine